Gene detail

Detailed information of ENSTIFP00000028592.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: XP_044163458.1, LOW QUALITY PROTEIN: ATP-dependent RNA helicase TDRD9-like [Acropora millepora]
Species Montipora efflorescens · all data for this species · gene families

Sequence

CDS

ENSTIFT00000030736

ATGGGGGACATAAGTCTTGATATGATCAAGGACTTTTACAGTCTCAAACCGCTCTCTAAGGCAAGCAAGATTACAGACGCGAGAATAACTGGCCGGTTTTTGCAGCAGGAAGGCACAATGATTTTCGTCCAaatcaagatgacttgctcaaaaaaaaaattgatacctTTTGGGTCGCAGTGGTTTAATTGTTTCatggcagttttcacaaaaacccaaacgtttttacataaaactgccgcaatctttactttttcacttttaaacctgaaaacattggtgCCTTGCAGCTACACTGTATGTTCATGTCTTTTTAGCCCACCGACCACACCTTCATATATTGGTGGTTACTGTTCAACTGGCCCTAAGTTGGAAGATCTTTATGATGAGATGGATCAACTAGAAAACAATCCCCCTCAGGGAGCTTCCGATGAAGTGCCAGCTGCTTTAAGAGAAGAAGAGGCCTCGCACATTTTTGATAACTACTCGTTTGATCACACATATTCTCCAGACCTTCCTATCACTGCTTATCGTCAGCAAATTGTGGATACCATTGAAAGCAATTCTGTGACTGTTATACAAGGGGCTACGGGCAGTGGTAAAACCACCCAAGTTCCCCAGTACATTCTGGATGAGTATGCCAAGAACCAACGGTATTGTAACATCATTGTTACACAGCCTAGACGTATTGCAGCAGTCAGCATTTCCAAGCGGGTGTGTCAGGAAAGAGGTTGGACTCAGGGTAGCTTGGTTGGATACCAGATTGGACGAGACAAGTGCGTCAGTGAGGATACTCGCCTGTCATTTGTTACAACTGATGTGTTGCTGAACAAACtgattcaatccaaaaatatgAACCAGTATACTCATGTTATTCTAGATGAGGTACATGAACGTGATCAAAGCACAGATTTCTGCTTACTGGTGGTGAAGAAACTGCTTCGAACAAACTCCAGACATGTGAAGgttgtgCTAATGTCAGCGACAATTCAAAGTGACTTATTCTCCATGTATTTTGCTGTGCCAGTGAGGGGCAAAGTAGAGGGTGCTCCAGTGGTTTCTGTAGAGGGAAACTCCTTTCATGTAGTGGAATGTTACTTGGAGGATCTTAAAGATATTGGTATGCTTCCTGATATCATTCCTGAGGAGCCAGGTGTTGATAAAGTTGGCTATGAACTTATAGGACACCTCATTTGCCACCTGGATGAGTTAGAAAAAACCAAGTCATTAAGGTTGTGGATCCTGCCATTACATTCCAAAATAACCACTCTTGAGCAAGGAGATGTTTTCAAGAAGCCTCAAGAGGGATTTAGAAAGGTCATTTTGTCAACAAACATTGCTGAAAGTTCCATCACTGTTCCAGACATTAAATATGTCGTTGATTTTTGCCTGGTCAAGTGCCTATTATGTGACACAGAGACAAATTATCAGAGTTTGAGAATGCAATGGTGCTCTAAGGCAAACTGCACTCAGCGCAAAGGTAAATGTTCTtctgtatgggagaatcttgacctcggtcgtgtgtacagacctcactgcgttcggtctgtactcacgacctcggtcaagattctcccatacagacctcctgctcggttaataagaATTTTCTCcaaaaaattctactttttcttgCTATACTATTGGATTGGTTATGTACTAGAAAGTTTAGTAGTTGATCTAAAAAGACTGATATGCATTCTTATTATTTACTGTTTGTGTTTCCCTGTAGGTGCTGCTCTATCTTTGCAGTCGTTTTTTGCCAAACCTTACAGAAGGGAATTTGAAGCTTACAGCAAGAAGATGGCCTGGAGCGACTTCTCATATAGTGACTGCATCACAGTTCTCAATGCTTACAAGGGGGAACAGAACTGGTGCAATGAAAACTTTATGCAAGCAGGACGTGTCAGGGAGCTTGTGATCTGTGGCGCATTTTATCCCAATTACTTTTCTTCAAGTGACTTGGATGAAGCTGAAGTGATGAAAATCATGTCTGGACATGATCCTTGTACCACTGTTATTGTCAGGAACATGCCTCCTCATGGTGCTTTGTACAGAGCAGCAATTGCAAGATTGTTCCGACAGTGCGGCAAAGGCAAAGCTCTCTATTTTGAGGATACATATATCGAGTTTGAACCACCTCCTGGTATGGAGCAGCAATCCAACACGGTCTTGCCAGCTGTCTACAAAGCCATTAAAATGAGACATCTTCGAATGCCTCTAAAGCTGTTCATCTCAGCGGCTAGAGGCAAGGAAATGGACAAGTATATGGAACGGAAGATTGAGTTAGCAGAACGGAACCCTGAACCTGGTGAGAAACCACGCCTTCGAACAAGCAGGTCAGTTTGCCAGCAAGCAAGCTTTGCATGTAGAGGGTCACGGATGATTAGGAATCGGGAAATGTCACGTATCAATCTTCCGAAAATGGGCTATTTGGAAATTGTTACATCAGTGGTAATAAATGCTGGACACTTTTGGGCGCAGAAACCTGAGAGTGAATCAGCCAGAGGTCTACAAGTGCTGCAAGAAAGAATAAACACCAATGAGGGAAGAAACCTACGGCCATTGAACCAGAGAAGCCTCCATGTTGGAATGCTGTGTATTGCCTTGTTTACGGAAGATGACCTGTTTTACAGAGCGAAGGTTCATGCCCCGGGGAGCAACATCCCTCGCGTGTGTCGGGCATTTGAGTGTATGTTGTGTGAAGTAGCTCCAATACCAAGCGCTCACTGTCCGGCGGGGGCCTGGTCCAAGAGAGCCACTCAGACGTTTATACAGCTGACAGAAAACAGAAAGTTGGCTGCCAAGGTGTATTCACAGGTGAAGAACGTTCTTCGCGTGGATTTGTATGACACCAACACTGAAGAGGACATACATATCAATCAGCTGCTGATTGACCAGGGCTTTGCAATGTACCAGGAAGAGTCTCATATCTCCAAGGTAATTCAGTTggctttGGACATGGAACTTCTCGCTGCCTCTGCAACTTCTTTTACCAAAAGGGCTATCCTCTGTCCTTTGAAAGCAATCCCTTTTTATTCCTTGCTGTTGAATTACAGATCTGTTCGAATCGAACAAGGCTCGGTCAACAGTGTCATTTTGAATGATCAGCCCCAGGACTCTCATCAGAGATTTCTAGTGGCGGCCAATATTGGTATAAACACGACTGGTTCAACAGTGGTTaacacaacacaatgtccctggccaggacccgaacctggaccaaTCGATCCGGAGTCGACCGCACTAACCACGAGGACACCgcggctttaa

Transcript

ENSTIFT00000030736

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NDG6	ATP-dependent RNA helicase TDRD9 OS=Homo sapiens OX=9606 GN=TDRD9 PE=1 SV=3
Q3MHU3	ATP-dependent RNA helicase TDRD9 OS=Rattus norvegicus OX=10116 GN=Tdrd9 PE=2 SV=3
Q14BI7	ATP-dependent RNA helicase TDRD9 OS=Mus musculus OX=10090 GN=Tdrd9 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003306 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0010529 all species →	Biological Process	obsolete negative regulation of transposition	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSTIFP00000028592.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.