Detailed information of ENSTIFP00000030004.1 in Montipora efflorescens

Genomic Location: BLFP01003319.1:38294...39909
NR annotation: XP_029212918.2, cryptochrome DASH-like [Acropora millepora]
Species Montipora efflorescens · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q4KML2Cryptochrome DASH OS=Danio rerio OX=7955 GN=cry-dash PE=2 SV=2
Q75WS4Cryptochrome DASH OS=Xenopus laevis OX=8355 GN=cry-dash PE=2 SV=1
Q7NMD1Cryptochrome DASH OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=cry PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009495 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03441
all species →
FAD_binding_7FAD binding domain of DNA photolyaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002081
all species →
FamilyCryptochrome/DNA photolyase class 1Interproscan
IPR036134
all species →
Homologous_superfamilyCryptochrome/DNA photolyase, FAD-binding domain-like superfamilyInterproscan
IPR005101
all species →
DomainCryptochrome/DNA photolyase, FAD-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11455
all species →
CRYPTOCHROMEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000719
all species →
Biological Processphotoreactive repairInterproscan
GO:0003677
all species →
Molecular FunctionDNA bindingInterproscan
GO:0003684
all species →
Molecular Functiondamaged DNA bindingInterproscan
GO:0003904
all species →
Molecular Functiondeoxyribodipyrimidine photo-lyase activityInterproscan
GO:0071949
all species →
Molecular FunctionFAD bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSTIFP00000030004.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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