Gene detail

Detailed information of ENSTIFP00000030848.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: XP_027044005.1, U6 snRNA-associated Sm-like protein LSm3 [Pocillopora damicornis]
Species Montipora efflorescens · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32PE9	U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3
P62310	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV=2
P62311	U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009089 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01423 all species →	LSM	LSM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010920 all species →	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR001163 all species →	Domain	Sm domain, eukaryotic/archaea-type	Interproscan
IPR034105 all species →	Domain	Sm-like protein Lsm3	Interproscan
IPR040002 all species →	Family	U6 snRNA-associated Sm-like protein Lsm3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13110 all species →	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0005688 all species →	Cellular Component	U6 snRNP	Interproscan
GO:0033962 all species →	Biological Process	P-body assembly	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:1990726 all species →	Cellular Component	Lsm1-7-Pat1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSTIFP00000030848.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.