Gene detail

Detailed information of ENSTIFP00000030987.1 in Montipora efflorescens

Genomic Location: BLFP01003549.1:123620...148703
NR annotation: XP_044174564.1, STAM-binding protein-like isoform X1 [Acropora millepora]
Species Montipora efflorescens · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSTIFT00000033328

GCGACAACTTGTTCAATTTGCGGGCGAAGTACAGGTTGATAATGGCATAGCACCGAAGAAATACTTTAGATCCGgtattgaaatggaaaaaatgGCAAACATTTACTATGATGAGGGCGATTTGGAACGTGCATTTATCTTGTATTCCAAGTTTATCACgTTATTTGTAGAAAAACTTCCTCAGCATCCAGAGTATTCCAAAGTATCACAGGTGGATAAATTCAATAACAGGAAGAGTCTCAAAACAGTGTTTACTGTGGCAGAGAAGCTTAAAGgagttttaaaggaaaaataccAACATGAATATGAAGAGTTCAAGGCACAAGAGGCTAAAAAGagggaagaagaagaagaagctaaGAGAAGAGAACTTGAGAAAGCAAATGAAGAAGAAAGGGTAAGAAAAGAACAGGAGGTTTTAAGAGCAACTCAACATCAGAATGACACAACAAGTTATGACATTGAGATGACTAAAGTTCCTCCGAGTGCACCACCATTGATTGGTGATTATCCTGCTCCACCAGCTTCACGCCAGGAAGTGTTTGTCAGTGACCAGGCGACAGTGGGTGACAATCAACGTCAACACAGTGCACCCAGTAGTACTGGAGATGCTGTGGGGCCACCCAGCTTCTCTTCACTTTATTCTGTACCCGTCACAAGTGTGCCAAAAGTAGACAGATCAACTAAACCAGTGATGTCTTCAGACCATTCCTCAACAAGTGGTCTGCGAAAAATCTACATTCCTGGAGATCTTATAAGCCACTTCCTTCACCTTGCATCAGCAAATACCCGAAAGAACTTGGAAACCTGTGGCATTCTTACTGGACGCCTTCAAAACAACATGTTCTGTGTCACACATTTATTAATCCCCAAGCAAACTTCAACTTCTGATTCATGCACAACTTTAAATGAAGAAGACTTGTTTGAATTTCAGGATTCAAATGATCTCATTACCTTAGGTTGGATACATACTCATCCATCACAGACAAGCTTTATGTCCAGTGTAGATCTCCATACTCATTGCAGTTATCAACTGATTATGCCTGAAGCAATTGCTATAGTTTGCTCTCCAAAGTATAGTGAGACTGGGGTTTTTTCACTTACACAGGAGTATGGTCTTCAGtttatattgaactgcagacaGCCAGGTTTTCACCCACATCCCAAAGAACCTCCTCTTTATGAGGAGAGTTCACATGTTGTATGGGACAAGATTGCGAGGGTTAATGTAGTGGATTTAAGGTCTAAGATTTAGGAAATAGAAAGTATTTTAATAATACAGTGCTTGCAGGATGTCATCGCCCTGACAAAGAACAGTAGGCATCCTCCCTAAAAGAAATGTGTTCCTTACAATATATCCATAACGTGTAAGAGAATAGAACTTCATGCTTATTGTCAGAGAATTATAGGCCGCAGCTGGGCATTGGACTTCGCAATCCATTAGTAATTACCTTAATTTGTAATAAACTTTATTGTGGATCACTTTAATGGTTAGGCTTTTCCTCTTGTGCCCTCTACGGAAGGGTACCTTGAACATGAGATATCGAAGAATATCTTGCCTTGAACTTGGCAAGAAATTTTAAGGAAGCTGAAACAGGGTTTTCAGATGAGCATGTGCACGCACGTGCCACACGCGCAATACTCAGAATCATGGGTGACTGGAAAGAAGTTCTGTTAGAAATGTTAAGCATTATCTACCCAGATTATTTGCATGTCTTACCTAGTGGaatgttttttcattttccaacagCATTTTCATAAATATGTATAGTCGAACCCTGTTAATGCAGACACCAAAAGGACCATGGACAGTGTCCGGCATTAACGGGGTGTCCGTATTAAGCGGGTTCATTGTAAATTGAGTCAAAAATACAAACATGACCATCAACAAACTGAACGTCTATAACGTACAAAGTAGCTAAGTGTCTACAATGTAGGACGCGAAAAATTAAGTCACCGTTATTTGGAAAGTATTAACTACTACAGTTTTACTTtcatttacaaacatttgcCTATCCTCTTTTGGGAAGAACGAAtatctttttttcaaacaaaattaatttgcactaAATTCGTATGTACAAAAACAAGAATTGCATTCTTACAATAAAAAGTTCGAATGGTTTTCAAAGAGTTATCCTCTgggcatgaaaacgaggctagatAGTGGGTGAACCCTTTTCGCTTTGTTTTTTCACAAAACAGATGCCAAATGCATCAGTGTCAAtgttttatactttttagcatGTGTTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6TH47	STAM-binding protein-like A OS=Danio rerio OX=7955 GN=stambpa PE=2 SV=3
Q9CQ26	STAM-binding protein OS=Mus musculus OX=10090 GN=Stambp PE=1 SV=1
Q8R424	STAM-binding protein OS=Rattus norvegicus OX=10116 GN=Stambp PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005281 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Jab_MPN · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01398 all species →	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan
PF08969 all species →	USP8_dimer	USP8 dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000555 all species →	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan
IPR037518 all species →	Domain	MPN domain	Interproscan
IPR015063 all species →	Domain	USP8 dimerisation domain	Interproscan
IPR044098 all species →	Domain	STAMBP/STALP-like, MPN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12947 all species →	AMSH-LIKE PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0061578 all species →	Molecular Function	K63-linked deubiquitinase activity	Interproscan
GO:0070536 all species →	Biological Process	protein K63-linked deubiquitination	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0140492 all species →	Molecular Function	metal-dependent deubiquitinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11866	STAMBP, AMSH; STAM-binding protein	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →