Gene detail

Detailed information of ENSTIFP00000034317.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: XP_015748796.1, PREDICTED: LOW QUALITY PROTEIN: sortilin-related receptor-like [Acropora digitifera]
Species Montipora efflorescens · all data for this species · gene families

Sequence

CDS

ENSTIFT00000036930

ATGATGGACAGCGCTGTGCGGGAAATTATCTTCCTTCTAGCCTTTTTGGTATTCTTAGCTGTTGGGATAACAGGAGTAGATGCCACAAAGAAGCCCAGGGAAAGGCATTTATTCGTTCAAAGGCGATCGCCACTTCCCGGTTCTCCGAGAAAGCTGCTCACAGTTGAACGGGAGGCTCTCGACAACAATTTTCCCTCCAGCGACAAGCGAGATGCTCATAATATCTTATCTAGGGTTCGACGATCTGTAAATCCAGATACGTCTCCCAAAGTGAAGGAGTTCAAGCTTAATGATAGTCACTACCTGGCCTATGTGCACTGGGCAGGAGACCACAGGGATACCATTGTGGTGTTGACACGGGATTTTACCCCAACCATAAACAGCAATAGTCATGTGTGGGTCTCCAAGAACTATGGTGTGAGCTTCAGCAACCTGACAAAGTTGTTCAATCTGCCTGGTACTAACAATGGGACGTTTGCACGCATTGACATGTTTTATTCGTCTCCTGTGGACAAAACAAGGTACCTTTTGGTCGACACTCTGCACAAAGCAGTGTACAGCACAATAGATGACTTTACCACAGTTATCGGGAGAAGTGTGTCTTTTACGCCAGATGAAATCTTTTTTCACCCAAGCAGCAGTAATGTTGCGTTGGCCTACGATGAGTCAACGTCAAAGCTGTACTACTCAACAGACTTCGGTTTTACGTGGCGCTTGAAGGATGAGAATTTAATGGTTAACTTAACCTCTTGTTATTGTTATAACATACTTTTTCATATACGTGTATACCAGGATTTCTTTGTCGCGGATGCATCAGAAAACCAAGTTTTCCTGGCTGTCGCTCACAGTGCAAGTACAACTCACCTGTACATTTCAGACACAACTGGAATAAAGTACAGCTTGTCAATGGAAAGAGTGCTCTACTTTTCGCACAACACTTCAGCACCATGGCTGAGGCAATACATACATGACAGATTTGTTGACCTGCACAAGGTTGAAGGACTTAGAGGAGTTTACATTGCCAGTCAGCTGACTCCAGGTCGTGTAGGAACTCGACGTATCATGACAAAGATAACTTTTGATAAGGGTGGCTTCTGGCAGCCAGTTGCAGCTCCGAAGTTGGACAATAATGGACGGGCTTTGAATTGTAGTTTGCCAAACTGCTCACTGCACCTGTCTCAGAAATTTGGGTCCTACTTCCGTTACACTCGCTTCACACCCATGAAATCCTGGAGAAACGCACCTGGAATTATCATGGCAACAGGTGAAACATGGTTGACATACAAATTCTTGAACAACACAAGAATGTATGTATATGGGTTACTGACAGAGCCAGGAGAGCGCAGTGCACAGTTCACCATATTTGGCTCCTACAGGGGCTTCCACAAGTGGGTTGTTGTgcagattaatttaaaaagcGTGTTAGGTAGGTGGATTACCATTGTAAATAACCCTGTTTTTCCCTGTGTTACTCTTGGCAGATATCGTAAGGTTCCAGGAGACACTTGTCATAGGGGGTTGGAGGACCTGTATGGGGCAGAGACAGCATCTTGTCCAATAAACGGACTGTCTGTTTTCTTGCTGTATGCTGCACGCACCTACATCCATAGAATCACACTTGGAGATCTTGTGGAAACCACCGTTCCTCTTGGAGGTGGACTGAGAAATGCCATTGCATTGGACTATGATTACCGACAAAACTGCATCTACTGGGCTGATATTACATTAGACACCATAAAACGGTCTTTCCTCAATGGATCTGGGATAATTGAGACACTGCATGGTGGTATTCAGCAAGTTGAAGGGCTGGCGTTAGATTGGCTTGGTGATAACATTTATTGGGTAGATGCCGGTGGTAAGAAGATAGAGGTGTCCAGAGCAGACGGACGCTTCCGTAAGAGCCTGATCACCACCAACCTTGATCGCCCTAGGGCAATTGTTCTGGATCCCAAAAGAGGAAGTGAAAATGTTTCAGAGGAGCCTAGCaaaatgttgcaaataaatCTTCTATTAAATCACAAATTTGACAGACAAAAATTTGGGAAACTGTTAAACTtactttatttctattattttAAGTGGCTACTTTTTTCctga

Transcript

ENSTIFT00000036930

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88307	Sortilin-related receptor OS=Mus musculus OX=10090 GN=Sorl1 PE=1 SV=3
Q98930	Sortilin-related receptor (Fragment) OS=Gallus gallus OX=9031 GN=SORL1 PE=2 SV=1
P0DSP1	Sortilin-related receptor OS=Rattus norvegicus OX=10116 GN=Sorl1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan
IPR006581 all species →	Domain	VPS10	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSTIFP00000034317.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.