Gene detail

Detailed information of ENSTIFP00000035695.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: CAH3152520.1, unnamed protein product, partial [Porites lobata]
Species Montipora efflorescens · all data for this species · gene families

Sequence

CDS

ENSTIFT00000038451

ATGATGAGCCGTAAAAGGCCTCATTCTTACAGTGATAGCGATGAAGAAGAAAACCCGAGTAACGCCTCTTGCGATCAGGGCAGCTCGGTTGATGAAGAAGACGATCCGGAGGAAATTTCTGTCTCGGGAAAACTAGAACTCATAACACTGGTAAACTTCTTATGTCACAGCCACCTCGAAGTTCCTCTGGGACCAAATGTGAACTTTATTATTGGCAAAAATGGAAGTGGCAAAAGTGCAATTATGACAGGAGTGGTTGTGGCTCTTGGGGGAAGAGCATTGCAAACCAGCCGTGGTTTGTGTCttaaaaactttgttaagaAAGGATGCAGCTATGCCCAAGTGTCGGTTAAACTGCGAAATGTAGGATCTGATGCATTTAATCACAGTACCTATGGAGATTTCATAACTGTTGAGAGAAAGATTACAGTAGATGGTGGGTCATCGTACAAAGTGAAGTCTTCTCAAGGGAAGGTTATATCTTCAAGCAGAATGGAAATTGATCATATTGTCGATCACTTTAACATACAGGTTGACAATCCTGTGTCCCTTTTAAACCAAGACACAAGTAGGAATCTGTTGAACAGTAAAGATGGAAGTGATCTCTACAGGtttTTCATGAAGGCCACTAACCTTGAACAAATAACCAGTGATTACTACCACGTAGTGGAACAGAAAGACATAGCCTTGGCAACTTTGCAAAAGAAGGAGCAGgACATTCCCGAAGTTAGAGAGGAAGTTCGCAGACGTGAGGCCAGATTCATTGCCATGAAGCAAGTCAGAGATGTCAAGGAACAGATTGAAGAGCTGAAGAAAGAGCGTGTTTGGGCAGAGGTTattgaaaatgaaaagGATGTTGCTAAAATTGAAAGCTCTTTGGGGAGACTTAAGTCTGGCCTTCCAAACTATGACAAGAAGATCCAAGGATGTGagGACAAAATGACGGAAATTGAAGAGGAAGTGAGAACAGTAGAACATGCAATAACACAGATAAAAAATGAGGCAGAGTTGCTACAAGCAAAAAAGAAGGAAGTGTGTACGCAactacaagaaaagaaaaaagcattaaaagagAAACAATCTGTTGTAAGAAGACTGCAACAGGAAATTGTGGAAGAAACACGCAACCAAGCCACATATCAAGAAAGATTAGAAGAAATAATGAGCTCTGTTGAGATGGAGGAGGAACGCCAGGAAAAGAATCTTTTATTAGAGAAGAGAAAGAAGGATGTGGAAAAACTCCAAGCAGATCTTCAGGatctacagaaagaaaaaaatgaagtgcAGAGTGAAAAGCAAAAGTACAGAGAACAGCTTGCTCAGTTGAGTCAAGAGGAAGACTCTCtgggaaaagaaattaaagaaaagaaaaggcgtGTACAACAAGCTCAAAACCAAGCTGCTAACAGACTGTTGAAGTTTGGAGACTGGATGCCTCACTTAGTGAACAAAATTAACTTTGCTGTGCGAGAAGGAAAGTTTACTTATCCTCCTAAAGGCCCTATTGGATTGCATGTCCATTTGAGGGACCAAAAGTGGTCAAAGGCAATTGAAGCTTGTCTCAAAAATCTTGCATATGGATTTTGCGTGGCTAATTTTGAAGACTCTAAAGTTGTCAAGGCCATCATTGCTCAAACTTGTACAAGGTTCTTCCCAGTTGTGCTTGTGTGTTCTTTTCAGGAAACTTTGTATGATGTATCTTCAAATAAACCAACTGGTGAATATCCAACAGTGTTAGACATGTTGGATCTCGATGATccagtgatttcaaattgtttgGTCGACCAGcTTCACATAGAGTCTACTTTGCTCATAGAATCCAGGTCACAAGCGACTGAAGTAGTGCTTTCTAGGAATGCCCCAGCAAAGCAGGCCTTTGCTGCCAGCGGTGACCTTATAATTGGAGGGCGTTCTGCTAAATCCATTGCTCCTCCAAAAGATTGGCGGAATTATTTGTCGTCAAATGCATTTGAGGATGAAAGGACATTAGTTGAGGAAATCAACAATTTGAATCATTTCAAGGATGgagttggaaaaaaaagaagggAGTTGGAAGCCTCcttaaagcaaaaaaatAGAGAACTGCAACAAAACGAAGTTAACAAAAAGCAGTTGCAAGATTCAGTGAACAATCTAAAGTTGGAAATTGATGAATTGATGGAAAAACTTGAAGAGGAAGTCTCACCTGATGTATCTGAGTTGGAAACTGACCTTGAGCACTGTACACAACTCATTGCTGATCTCAGTGAGCAGAGTGAAAGTGCAGAGGAGGAGTTGGCAGAAGCTGGTAAATTAATGGCTGAGCAAGAGGCTGTCGATGATGAGCATAGAAGACGAATTGGTGAAGTTCTCAGGGATGCAGAACCCCTGAAGGAAAAGCTGGAGGCTCTAATACAAAAAAACGAGCAAAGAAAGGCAGAAAAGGAGCATTTTGAAAAGGAACGGGAAAAATTAGAGCAGAAAATTGATCACACAGAGCAGGAAAGGGATAGCCTCATCAAATTAGCCGAGCAAAAGGCAGAGAAGGCAATGCAACATTTTGATAGGGTTGAGACTTCTCGCACTGTGCAGGATCTTGAaacagaaataataaaaaagcaGAAATATATTGATGAAGAGGAAAGAAACCATCAAAGTGCAGAGGAAGTAACAAGAGGTTATCATGACATTTTAGGCAGATTCTCAGAAATAGTAAAAAACACCACAAATATCCAAAAGTATAACAAGCATCTGAACAATGCGATGTTGAGGAGAATGACTTACATTAAAGAAAAGAGGAAATTCATGGCATCAAACACTTCTCAGTTTTTCACTCAGCATTTGAGCCAGAGGGGATTCAGTGGACACATCACATTTGATCACAGTCGAGAGGTTTTAGAGCTTATTGTAAATGTCCACAAAGGCCCTGTAGGCGAACATTCTGAGAGAGGTGTCAATCAAAGCACAAGCAAAATGAGATCTTTGTCAGGTGGAGAAAGATCAGTGTCCACAATCTGTTTCCTGACAGCACTTTGGGGTGCCATGGAATCTCCCTTCAGATGTCTTGATGAATTTGATGTTTTTATGGACTTGTGGAATAGAAAAATTGTCACGAAGATGGTGTTAGAACTTGCCATGCTACCAGAGCAGCGAAATCGTCAGTTTATCTTCCTTACACCACTAGATTTGAGcACGACCCTTACGCAATCCCTTCACAACGTGAAGATACTAAAGCTGGATAACCCTCGATGA

Transcript

ENSTIFT00000038451

TGAAATATGCCGTTCGCCAAAAATCAAGGAATTGGTAGCTGCAGATGTctagcaacttctcaaaggaatgaAACAATTAAGAATAAGAGAACTTTCATAATTAAAGGTAATCGTTAGGTTACGTCCCACCCCTCCTTCGCAAGTAGCCAGATGCGATGTGTCAACAACGTCTGGGAGCGGATTATGACCGGGTGTGTATAAGGGCGACTCGAGGTCagtgtgaaaacaaaatatcgaTCGATCAACTCGTAAGCGAGTTTATATGATGAGCCGTAAAAGGCCTCATTCTTACAGTGATAGCGATGAAGAAGAAAACCCGAGTAACGCCTCTTGCGATCAGGGCAGCTCGGTTGATGAAGAAGACGATCCGGAGGAAATTTCTGTCTCGGGAAAACTAGAACTCATAACACTGGTAAACTTCTTATGTCACAGCCACCTCGAAGTTCCTCTGGGACCAAATGTGAACTTTATTATTGGCAAAAATGGAAGTGGCAAAAGTGCAATTATGACAGGAGTGGTTGTGGCTCTTGGGGGAAGAGCATTGCAAACCAGCCGTGGTTTGTGTCttaaaaactttgttaagaAAGGATGCAGCTATGCCCAAGTGTCGGTTAAACTGCGAAATGTAGGATCTGATGCATTTAATCACAGTACCTATGGAGATTTCATAACTGTTGAGAGAAAGATTACAGTAGATGGTGGGTCATCGTACAAAGTGAAGTCTTCTCAAGGGAAGGTTATATCTTCAAGCAGAATGGAAATTGATCATATTGTCGATCACTTTAACATACAGGTTGACAATCCTGTGTCCCTTTTAAACCAAGACACAAGTAGGAATCTGTTGAACAGTAAAGATGGAAGTGATCTCTACAGGtttTTCATGAAGGCCACTAACCTTGAACAAATAACCAGTGATTACTACCACGTAGTGGAACAGAAAGACATAGCCTTGGCAACTTTGCAAAAGAAGGAGCAGgACATTCCCGAAGTTAGAGAGGAAGTTCGCAGACGTGAGGCCAGATTCATTGCCATGAAGCAAGTCAGAGATGTCAAGGAACAGATTGAAGAGCTGAAGAAAGAGCGTGTTTGGGCAGAGGTTattgaaaatgaaaagGATGTTGCTAAAATTGAAAGCTCTTTGGGGAGACTTAAGTCTGGCCTTCCAAACTATGACAAGAAGATCCAAGGATGTGagGACAAAATGACGGAAATTGAAGAGGAAGTGAGAACAGTAGAACATGCAATAACACAGATAAAAAATGAGGCAGAGTTGCTACAAGCAAAAAAGAAGGAAGTGTGTACGCAactacaagaaaagaaaaaagcattaaaagagAAACAATCTGTTGTAAGAAGACTGCAACAGGAAATTGTGGAAGAAACACGCAACCAAGCCACATATCAAGAAAGATTAGAAGAAATAATGAGCTCTGTTGAGATGGAGGAGGAACGCCAGGAAAAGAATCTTTTATTAGAGAAGAGAAAGAAGGATGTGGAAAAACTCCAAGCAGATCTTCAGGatctacagaaagaaaaaaatgaagtgcAGAGTGAAAAGCAAAAGTACAGAGAACAGCTTGCTCAGTTGAGTCAAGAGGAAGACTCTCtgggaaaagaaattaaagaaaagaaaaggcgtGTACAACAAGCTCAAAACCAAGCTGCTAACAGACTGTTGAAGTTTGGAGACTGGATGCCTCACTTAGTGAACAAAATTAACTTTGCTGTGCGAGAAGGAAAGTTTACTTATCCTCCTAAAGGCCCTATTGGATTGCATGTCCATTTGAGGGACCAAAAGTGGTCAAAGGCAATTGAAGCTTGTCTCAAAAATCTTGCATATGGATTTTGCGTGGCTAATTTTGAAGACTCTAAAGTTGTCAAGGCCATCATTGCTCAAACTTGTACAAGGTTCTTCCCAGTTGTGCTTGTGTGTTCTTTTCAGGAAACTTTGTATGATGTATCTTCAAATAAACCAACTGGTGAATATCCAACAGTGTTAGACATGTTGGATCTCGATGATccagtgatttcaaattgtttgGTCGACCAGcTTCACATAGAGTCTACTTTGCTCATAGAATCCAGGTCACAAGCGACTGAAGTAGTGCTTTCTAGGAATGCCCCAGCAAAGCAGGCCTTTGCTGCCAGCGGTGACCTTATAATTGGAGGGCGTTCTGCTAAATCCATTGCTCCTCCAAAAGATTGGCGGAATTATTTGTCGTCAAATGCATTTGAGGATGAAAGGACATTAGTTGAGGAAATCAACAATTTGAATCATTTCAAGGATGgagttggaaaaaaaagaagggAGTTGGAAGCCTCcttaaagcaaaaaaatAGAGAACTGCAACAAAACGAAGTTAACAAAAAGCAGTTGCAAGATTCAGTGAACAATCTAAAGTTGGAAATTGATGAATTGATGGAAAAACTTGAAGAGGAAGTCTCACCTGATGTATCTGAGTTGGAAACTGACCTTGAGCACTGTACACAACTCATTGCTGATCTCAGTGAGCAGAGTGAAAGTGCAGAGGAGGAGTTGGCAGAAGCTGGTAAATTAATGGCTGAGCAAGAGGCTGTCGATGATGAGCATAGAAGACGAATTGGTGAAGTTCTCAGGGATGCAGAACCCCTGAAGGAAAAGCTGGAGGCTCTAATACAAAAAAACGAGCAAAGAAAGGCAGAAAAGGAGCATTTTGAAAAGGAACGGGAAAAATTAGAGCAGAAAATTGATCACACAGAGCAGGAAAGGGATAGCCTCATCAAATTAGCCGAGCAAAAGGCAGAGAAGGCAATGCAACATTTTGATAGGGTTGAGACTTCTCGCACTGTGCAGGATCTTGAaacagaaataataaaaaagcaGAAATATATTGATGAAGAGGAAAGAAACCATCAAAGTGCAGAGGAAGTAACAAGAGGTTATCATGACATTTTAGGCAGATTCTCAGAAATAGTAAAAAACACCACAAATATCCAAAAGTATAACAAGCATCTGAACAATGCGATGTTGAGGAGAATGACTTACATTAAAGAAAAGAGGAAATTCATGGCATCAAACACTTCTCAGTTTTTCACTCAGCATTTGAGCCAGAGGGGATTCAGTGGACACATCACATTTGATCACAGTCGAGAGGTTTTAGAGCTTATTGTAAATGTCCACAAAGGCCCTGTAGGCGAACATTCTGAGAGAGGTGTCAATCAAAGCACAAGCAAAATGAGATCTTTGTCAGGTGGAGAAAGATCAGTGTCCACAATCTGTTTCCTGACAGCACTTTGGGGTGCCATGGAATCTCCCTTCAGATGTCTTGATGAATTTGATGTTTTTATGGACTTGTGGAATAGAAAAATTGTCACGAAGATGGTGTTAGAACTTGCCATGCTACCAGAGCAGCGAAATCGTCAGTTTATCTTCCTTACACCACTAGATTTGAGcACGACCCTTACGCAATCCCTTCACAACGTGAAGATACTAAAGCTGGATAACCCTCGATGACCTTTTTTGAAACTagaattatatttttatttcatagaattttttttactgttcAGTTTTTagcaaaatcaaatttttgatAGTTATTGAGTTTATacattaaaatttgaaacaggaTTGTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P9I7	Structural maintenance of chromosomes protein 6 OS=Xenopus laevis OX=8355 GN=smc6 PE=2 SV=1
Q924W5	Structural maintenance of chromosomes protein 6 OS=Mus musculus OX=10090 GN=Smc6 PE=1 SV=1
Q802R8	Structural maintenance of chromosomes protein 6 OS=Takifugu rubripes OX=31033 GN=smc6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001806 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13476 all species →	AAA_23	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038729 all species →	Domain	Rad50/SbcC-type AAA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19306 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030915 all species →	Cellular Component	Smc5-Smc6 complex	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22804	SMC6; structural maintenance of chromosomes protein 6	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.