Gene detail

Detailed information of ENSTIFP00000036041.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: XP_029213304.1, DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X3 [Acropora millepora]
Species Montipora efflorescens · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R587	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1
Q80UW8	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1
B0BNE2	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006699 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01191 all species →	RNA_pol_Rpb5_C	RNA polymerase Rpb5, C-terminal domain	Domain	Interproscan
PF03871 all species →	RNA_pol_Rpb5_N	RNA polymerase Rpb5, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036710 all species →	Homologous_superfamily	RNA polymerase Rpb5, N-terminal domain superfamily	Interproscan
IPR014381 all species →	Family	DNA-directed RNA polymerase subunit Rpo5/Rpb5	Interproscan
IPR035913 all species →	Homologous_superfamily	RPB5-like RNA polymerase subunit superfamily	Interproscan
IPR000783 all species →	Domain	RNA polymerase, subunit H/Rpb5 C-terminal	Interproscan
IPR005571 all species →	Domain	RNA polymerase, Rpb5, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10535 all species →	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001055 all species →	Molecular Function	RNA polymerase II activity	Interproscan
GO:0001056 all species →	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSTIFP00000036041.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.