Gene detail

Detailed information of ENSTIFP00000036652.1 in Montipora efflorescens

Genomic Location: not available for this species
NR annotation: XP_029198093.1, nuclear factor 1 B-type-like isoform X2 [Acropora millepora]
Species Montipora efflorescens · all data for this species · gene families

Sequence

CDS

Transcript

ENSTIFT00000039535

ACTTCGTCATGTCGGTCGTTGGAAACAAACTCGGGTCGTCTTGCCGTTGCGTCATTTCCAACCCCGATCAGAAGGGGAAAATGAGGCGCATAGACTGTCTGCGACAAGCAGATAAAGTATGGAGATTAGACTTGGTGATGGTGATTCTATTCAGAGGTATTCCTCTGGAAAGCACGGATGGTGAACGTTTGGGCAAGTCTCATCACTGCCAGAGTCAGTCTCTTTGCGTTCTGCCCAACCATATCACGGTGACAGTAAGGGAGCTGGATCTATTCCTTGCCAACTTCATGTGTAACAGGGAGCACAAGCAGGATTCCAGCAGTCCGGTGAGAAGTACAAACGATCCAGATTCTCATCCAATCGCTACAGAGCAGAATTTGGTCTCATCTGGTGTGTTTACAGTGACAGAACTCTACAATTATTCTAAAACACCCATCAAATGTGTTAGCTCAACACATGGCCTGATCTTAACTGATCTGGAGAATCCATCATATGGTGATGCAGGTCTTGAGCAGCGTTTTCCCAATGCACTGAGCATACACCCACGGCCAGACTCATACGACCTCAGATACAGAAAACGAAGTAGAACTATTAGCTCTGTTTCCTCAGTTGATGACGATTGTGATGAAGATGACAGAGACAGCACAGGGATTTATGTACAATCACCAGCTAGTTTCTCATCTCAAGGGTCCAACTGGCAAAATGATGTAGACTCTGGGTCCAGTGTTATTCACTCTCCTTTGATTCCGTTTCCTGCCAAAATCAAACCGGAACAAAACTGTTCAGGCTACAGCCCAATGGAGAATCACAGCTCTGTTATCACCTGTCATAACGGGACCCATGAGCCCTCATCACCAGCTGTTACCTCATATAGTAGTCAAACACCACACTTGCATAACAGACCAATGAGAGACTGTAACATGAATGAATCGTCATTTATCATGCAGTTAGCACAAAATCCAAAGGGACATGGGCCAGCAAGTTGTGGTTTTAGCATGAATCTTCAGCAGCAAGGATTTGCATTTCGCCTCCCAATGCCAAATACTAATATACCCTCTGTAGGTTCAGCTCCATGCCGTACCGCACCTTCTCCTAGTGAATACATTCAGTTACTGGAGAGACCCCGCTCAAGTTCAGCTCCAAATAGCAGGCACTTTCCCACTGGGACGTCTGTGGTGATACCACCGCCATTAACAAGATCACAAAATGGGGCAAGTGGCATGAACACAGATCCACGTAATTCCCCAggacatcaacaacaacagtcACCAGTTTCAACATGCCCAAGTAAAACAAACTCACCCTCAGGAATAACACTGAATACAACTGTTCAGATAATACAGTCTCCATCAAACAATCCCAACACTGCATCATCAACATATGGCAGCCAAAGTCAGCAAGTGTTCAGCTATCCAAACCTACCTCCAGGGTGTCTTTCTTCTGTCAGCCCATCATTACCAGTTGGCTTGTTTACATCACCAGGAAACACAATAAGAGGAAGCATGACTCCTCGCTGGCCTGCAGCAATTCCAGTTCAACCCGTATCCAGTACAGGAAGTGAAGCAGAGTCAGCAGAATATAACCAAATGGTGCCAGGATTTGGTGGTATAAACCCTAACGAGGGAATGCTGGAAGGTTGGTGTCAGGGAGGAATTTCTTCCCAATAAATAATGTCCCAGAATCAATGGAGGCCATATCAGCTCCAATATCATCCTGAATTAAGTCATGATTACTGGCCTAGTGCAAGGAAGAAAACACTGCATGTTTTCTTGGGCTTAGCAAGAGTACGCTGACAAGAACAGGGAAGTACCATCCTGATTTCAAGTACTAGTGAGaaaaacaacttcaaaacaagtGAAGGCATGCCTTCCACCTGTTAGCTTTATCTTCTCAGTGCAAAAAGACTAGCACCGTTAATCCTCTGTTAAGCCCCCTCCCCTTATTCTTCGTAACAAAATAGATATGACTGTATTAATTTAATGATGACAGTGACAATTCATGTGGACTGATCCGGTATCGTTTCTTCACGTTCTGGAAATTTGGATTTGGTTCCTGCAAGTaataaaaatgttgcaaataacTTGTACAATGTGTATGTCATCACTCAAATCTCCATATTAATTAGACAGCCATTGCCCTAGCTGGTCCAAAACACAAAGTGGGGAACTGTAACTCTagtctgtttctttctttcttttctgtcCTTTTTTGCTACCGGTAATTCATTTTGCTAGACTATAAATAAGCCCCCCTTCAAACatgcttgaaataaataagcccCTCAGGGGACTTAATAGAGGATACGGTATGTCACAGTAATACACAGCAACTCTCTTGAATTATCAGACACAGTATTGACTCAAATCTCAGCAGTGCCATTTACAGACACAAAGACAAACCTAACAGCATTGAAACAATGaacacagcaccacaggaaaggCTATTTGCTATCACTTTGTTACAACTTGGCGAGTAgaaaaatcagcaaaatacaaaattttgTCTTGACATATTTTAAGTTATTGTTGTCATATGTGTAAAATATCAGCATAAAATATTACTTAGATGCATCCCTGTACATATCAAAGAATTTTAAGGCTTTTAGCACAGTAATAGGACCATATTTATAAAATGCAATAGTAGAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P13623	Nuclear factor 1 X-type OS=Mesocricetus auratus OX=10036 GN=NFIX PE=2 SV=1
P70257	Nuclear factor 1 X-type OS=Mus musculus OX=10090 GN=Nfix PE=1 SV=2
Q14938	Nuclear factor 1 X-type OS=Homo sapiens OX=9606 GN=NFIX PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002791 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00859 all species →	CTF_NFI	CTF/NF-I family transcription modulation region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000647 all species →	Family	CTF transcription factor/nuclear factor 1	Interproscan
IPR020604 all species →	Domain	CTF transcription factor/nuclear factor 1, DNA-binding domain	Interproscan
IPR003619 all species →	Domain	MAD homology 1, Dwarfin-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11492 all species →	NUCLEAR FACTOR I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04454	MEF2C; MADS-box transcription enhancer factor 2C	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.