Gene detail

Detailed information of ENSTIFP00000036720.1 in Montipora efflorescens

Genomic Location: BLFP01003757.1:1199158...1220661
NR annotation: XP_015761571.1, PREDICTED: nipped-B-like protein isoform X2 [Acropora digitifera]
Species Montipora efflorescens · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSTIFT00000039613

ATGGTGACAGCTCTTGTTCTTCAGCTTATTCAGTGCTCAGTCAAAATCCCTGACAAAGCTGATGAAATGTCAGAGGCCGCTGGTTCTGAAGATGGTGGAAATGAGAACAAATCTCAAGTTGATAGGAATCTTTTAATCATCACTTCCTATGAGACTGCTTTAAGAACAGCACAGAATTTTCTGTCaatgtttctgaacaaGTGTATCAGTGTAGGAAAGGATGAAGAAGATTATCGCCCTTTGTTTGAGAATTTCCTTCAAGACCTGTTAGTCACACTTAACAGGCCTGACTGGCCTGCTGCTGAGGTCCTGCTTACACTTCTTGGCAGACTGTTGATTGTCACTTTCAACAACAAAGCAAATGATGTTAGTCTGAGGGTTTCAGCTATTGACTACCTGGGTGTTGTTGCTGCCCATTTGAGAAAAGATGCAGTCAACAGTCAACAGGACACAGAGGGAATTACGGAGATTTTAGTGGAGgaacttggagaagtgtctgaTGATTCCAGTGATGAGGTGTCTCATTTGGATGAACGCTCTGACAAAAGAACTCAAATTTTGCAGAAAGCTATTTCACACTGGTTGAGTACAGAGGGAAGCAGTGATGCAGCCTTTATGTTTGCTCGGCAGTTTTTCCTGGCCCAGTGGCTTAGAGACACCCATGTTGAAATGGAACGTTCCCTCAGAGCTCCTGCAGAGGATCCTCTAGAAAGTGGCGAAGGGCTGAAAAATGATGCCTTGTTGAGTGCTCAAAGTTTGGCCAAACTAGAGGATAGgaaaatgttcttgttttctgttttagATGGAGGGAATATGACAAGCATAAGATCATCTCAGAATCACTTAGATTATGAACAGGCAACTCTGGTCACAAGATATCTTGCCTCGTCAAGGTCATTTTCCAAGAGTTTTGATGCATACTTAAGTCAGATCTTAAGAGTGCTTAATGAAAGTGCTGTTGCCATTAGAACCAAAGCAATGAAGTCATTGTCTGCTGTTATCTCAGCTGATCCTTCCATTCTTTCTAGGGAGGATATGCAGAAAGGAGTTCATGCAAAGTTTGTAGACATGTCAACTAGTGTGAGAGAAGCTGCTGTTGAACTTATTGGACGCTTTGTTCTCAACAAGCCTGAGCTTATTCTTCAGTACTATGACATGATAATTGAAAGGATATTAGATACTGGCATTAGTGTCAGAAAGAGAGTGATCAAAATTCTTAGAGACATATGCATCAACCATCCAGATTTTCCAAAGACCACAGAAATTTGTGTGAAGATCATAAGAAGAATATGTGACGAAGAGGGAATAAAGGAGCTGGTGACCAAGGTGTTTCAACAGATGTGGTTCACTCCACTCAAGGGAGATGAAAACTCGGAAATTCTTGTCAAACGTGTTTGTCTCATGACTGATGTAGTTGCTGCATGTGGTGAGAGTGGAGATTGGTTTGAACAGCTCCTTGAAAATTTACTGAACAATGAGGAAGATTCCGTTTCCAACTCTTCGGAAATTGCTAGTGGACAAATTGTGAACTGTCTGGTAGAGAATGTTTTGAGCCTGGAGGAGAGAGCAGTTGTCCAGTCAGAAGGAAAAGGTTCAAGTAGCCAGAGACTTGTGTCCAGCCTGTCAACTTTATATTTGATTAGCAAGATTAAACCTCAGCTGTTGGTAAAACATGCCACAACTTTGCAGCCTTACCTTAGCACCAAATGCAGTACTCAAGGAGATTACCTTGTAATCCATAATGTGGCACGTATTTTGGAACTAGTGGTACCTCTTATGGAACATCCTAGTGAAACCTTCCTGGCTAGCTTAGAAGAAGATTTGATGAGACTAACTGTCAAACATGGACAAACGGTTGTGCAAAGCTGCATTAGTTGTTTAGGTGCTGTGGTAAATAAAGTTACTCATAACATCCAGCTTGTGAGGGACTATTTCCAAAAATACCATGGGTACTTAGCAAAGGCCAAAGCAGACTTGTGTAGAAATCCAAGCAAGGCACAAGTTAATAGACCAACATTATTGCGATCCCTGTTTACTCTTGGGCTACTTTGTAAGCAGTTTGATTTTGATAGTGATGTCAAGCCAAAAAACGAGGGTTCCACTAAACACAGAGTGTTTGCTGTGTACATCTACTTTACCAAGCACCCTGATGAAGAAGTTTGTCAAAAGGCCATCACAGGACTTGGGTTTCTTTGTATGAGGTATGGTGACCTGCTTCTAAAAGGAGAAGCTAAAGAACTTTACCAAGGAATCTTATCACAGCCTAATCAACCTTTAAAGCTTAAACTACAGGTTCTGAAGAACTTACAGATGCATCTTTTAGAAGACGAAaaaagattacatgtacatgttcaaGATCACAGGCACAAAAAGCCAGAAAAAGagaatcaaaatcaaaatctcAAGGAACTTGGAGATATTCAGTCTGGTACCACTAGTGCTGTGATGCAAGTGTACCTCAAGAGTGTATTGGAAAGCTTCTTGCACCCCCAGCCTTCTGTGCGTATGGCTTCACTTCATGTAGTGAATTTAATTTTGAGACAAGGTCTTGTTCACCCTGTTCAGTGTGTTCCCTATCTGATTGCTATTGGAACTGATGAAGAGCAACAAATGAGAGTCAAATCAGACCAGCAGCTTTCAGAAATAGACAGCAAATATTCCATGTTTGTTCAGaTGAAAGCCCTGGCTGGAATAAAGATGTCATTTGAGCTTCAGCGCCTAGTTCAAGagGACAAGAACACAGCAATACGTGGCTACAGAAAAGAGAGCAGTCAATGTTTGCTGAGTCATTTGTATTCTATCATACGATCAGGAAGACAACCAAGGCGGTCACTCTTACAGTCCATGCTGAGAATATTTGATGATCACAAGGGAACCAAGGTAGACTTGTTGCTGTACATTGCTGACAACTTAGCACATTTTCCTTATTCGGTCCACGAGGAGCCACTATTTGTAATTTACCACATTGATACCATTCTCTCTGTGACTGGTGCAAATCTACTGCATTCATTTAAAGAGgCCATGACTGTTCAAACAAAGCCACCAGTTGAAGGGGGAGACAATATCCCTGTGGCAAGTGATCGTTATGATGAAGAAGAAACAATAGAGTCTGTTCTGGCACGGATTCCAGCAGATCCCACCAACTTTGAAAAGTGCTGTGTAGCCTCACAAGGCTGTTTGCTACTGTTGTACTTGAAACAGCAtcttaaagaaatgtatgggttTTCAGACAGtaaatgCCACAAGTATTCACCTTCAGAGCCAACAAAAGCTTATGACAAAACAGTGTCAAGGAAAGCAGGAGTCTTCTTTGAACCTGAGCAGGTTTTGCGATATGTGGAAGACCCGGATGCCGTTAGGAGCCACGAACAGCTGGTGCATGATTACTTAGAGTTTAAAGTTCTAATGATGAGACTGGATCCATCTGAAGAAGACAGTGATGACTCTGGCAATGGAGGAAGGGAAAGTCCTGTTGGTGAAGGACAGATTTTTGACCTTGAGGGAAATCCCATCGCTAAGGCACGTGATAAGCGTGCTGCTAAACCAAGAAAGGTGATC

Transcript

ENSTIFT00000039613

GATTTTCAGGAAGTATGTGAAGCACAGAGACCTAATCCTTGAGGACATCTTTGCATCATTAGCAAGACTTCCAAGCAGTAAAAGGACTCTCCGAAGTTATAGGCTCAGTGGAGAGGTCTCCATTCAAATGGTGACAGCTCTTGTTCTTCAGCTTATTCAGTGCTCAGTCAAAATCCCTGACAAAGCTGATGAAATGTCAGAGGCCGCTGGTTCTGAAGATGGTGGAAATGAGAACAAATCTCAAGTTGATAGGAATCTTTTAATCATCACTTCCTATGAGACTGCTTTAAGAACAGCACAGAATTTTCTGTCaatgtttctgaacaaGTGTATCAGTGTAGGAAAGGATGAAGAAGATTATCGCCCTTTGTTTGAGAATTTCCTTCAAGACCTGTTAGTCACACTTAACAGGCCTGACTGGCCTGCTGCTGAGGTCCTGCTTACACTTCTTGGCAGACTGTTGATTGTCACTTTCAACAACAAAGCAAATGATGTTAGTCTGAGGGTTTCAGCTATTGACTACCTGGGTGTTGTTGCTGCCCATTTGAGAAAAGATGCAGTCAACAGTCAACAGGACACAGAGGGAATTACGGAGATTTTAGTGGAGgaacttggagaagtgtctgaTGATTCCAGTGATGAGGTGTCTCATTTGGATGAACGCTCTGACAAAAGAACTCAAATTTTGCAGAAAGCTATTTCACACTGGTTGAGTACAGAGGGAAGCAGTGATGCAGCCTTTATGTTTGCTCGGCAGTTTTTCCTGGCCCAGTGGCTTAGAGACACCCATGTTGAAATGGAACGTTCCCTCAGAGCTCCTGCAGAGGATCCTCTAGAAAGTGGCGAAGGGCTGAAAAATGATGCCTTGTTGAGTGCTCAAAGTTTGGCCAAACTAGAGGATAGgaaaatgttcttgttttctgttttagATGGAGGGAATATGACAAGCATAAGATCATCTCAGAATCACTTAGATTATGAACAGGCAACTCTGGTCACAAGATATCTTGCCTCGTCAAGGTCATTTTCCAAGAGTTTTGATGCATACTTAAGTCAGATCTTAAGAGTGCTTAATGAAAGTGCTGTTGCCATTAGAACCAAAGCAATGAAGTCATTGTCTGCTGTTATCTCAGCTGATCCTTCCATTCTTTCTAGGGAGGATATGCAGAAAGGAGTTCATGCAAAGTTTGTAGACATGTCAACTAGTGTGAGAGAAGCTGCTGTTGAACTTATTGGACGCTTTGTTCTCAACAAGCCTGAGCTTATTCTTCAGTACTATGACATGATAATTGAAAGGATATTAGATACTGGCATTAGTGTCAGAAAGAGAGTGATCAAAATTCTTAGAGACATATGCATCAACCATCCAGATTTTCCAAAGACCACAGAAATTTGTGTGAAGATCATAAGAAGAATATGTGACGAAGAGGGAATAAAGGAGCTGGTGACCAAGGTGTTTCAACAGATGTGGTTCACTCCACTCAAGGGAGATGAAAACTCGGAAATTCTTGTCAAACGTGTTTGTCTCATGACTGATGTAGTTGCTGCATGTGGTGAGAGTGGAGATTGGTTTGAACAGCTCCTTGAAAATTTACTGAACAATGAGGAAGATTCCGTTTCCAACTCTTCGGAAATTGCTAGTGGACAAATTGTGAACTGTCTGGTAGAGAATGTTTTGAGCCTGGAGGAGAGAGCAGTTGTCCAGTCAGAAGGAAAAGGTTCAAGTAGCCAGAGACTTGTGTCCAGCCTGTCAACTTTATATTTGATTAGCAAGATTAAACCTCAGCTGTTGGTAAAACATGCCACAACTTTGCAGCCTTACCTTAGCACCAAATGCAGTACTCAAGGAGATTACCTTGTAATCCATAATGTGGCACGTATTTTGGAACTAGTGGTACCTCTTATGGAACATCCTAGTGAAACCTTCCTGGCTAGCTTAGAAGAAGATTTGATGAGACTAACTGTCAAACATGGACAAACGGTTGTGCAAAGCTGCATTAGTTGTTTAGGTGCTGTGGTAAATAAAGTTACTCATAACATCCAGCTTGTGAGGGACTATTTCCAAAAATACCATGGGTACTTAGCAAAGGCCAAAGCAGACTTGTGTAGAAATCCAAGCAAGGCACAAGTTAATAGACCAACATTATTGCGATCCCTGTTTACTCTTGGGCTACTTTGTAAGCAGTTTGATTTTGATAGTGATGTCAAGCCAAAAAACGAGGGTTCCACTAAACACAGAGTGTTTGCTGTGTACATCTACTTTACCAAGCACCCTGATGAAGAAGTTTGTCAAAAGGCCATCACAGGACTTGGGTTTCTTTGTATGAGGTATGGTGACCTGCTTCTAAAAGGAGAAGCTAAAGAACTTTACCAAGGAATCTTATCACAGCCTAATCAACCTTTAAAGCTTAAACTACAGGTTCTGAAGAACTTACAGATGCATCTTTTAGAAGACGAAaaaagattacatgtacatgttcaaGATCACAGGCACAAAAAGCCAGAAAAAGagaatcaaaatcaaaatctcAAGGAACTTGGAGATATTCAGTCTGGTACCACTAGTGCTGTGATGCAAGTGTACCTCAAGAGTGTATTGGAAAGCTTCTTGCACCCCCAGCCTTCTGTGCGTATGGCTTCACTTCATGTAGTGAATTTAATTTTGAGACAAGGTCTTGTTCACCCTGTTCAGTGTGTTCCCTATCTGATTGCTATTGGAACTGATGAAGAGCAACAAATGAGAGTCAAATCAGACCAGCAGCTTTCAGAAATAGACAGCAAATATTCCATGTTTGTTCAGaTGAAAGCCCTGGCTGGAATAAAGATGTCATTTGAGCTTCAGCGCCTAGTTCAAGagGACAAGAACACAGCAATACGTGGCTACAGAAAAGAGAGCAGTCAATGTTTGCTGAGTCATTTGTATTCTATCATACGATCAGGAAGACAACCAAGGCGGTCACTCTTACAGTCCATGCTGAGAATATTTGATGATCACAAGGGAACCAAGGTAGACTTGTTGCTGTACATTGCTGACAACTTAGCACATTTTCCTTATTCGGTCCACGAGGAGCCACTATTTGTAATTTACCACATTGATACCATTCTCTCTGTGACTGGTGCAAATCTACTGCATTCATTTAAAGAGgCCATGACTGTTCAAACAAAGCCACCAGTTGAAGGGGGAGACAATATCCCTGTGGCAAGTGATCGTTATGATGAAGAAGAAACAATAGAGTCTGTTCTGGCACGGATTCCAGCAGATCCCACCAACTTTGAAAAGTGCTGTGTAGCCTCACAAGGCTGTTTGCTACTGTTGTACTTGAAACAGCAtcttaaagaaatgtatgggttTTCAGACAGtaaatgCCACAAGTATTCACCTTCAGAGCCAACAAAAGCTTATGACAAAACAGTGTCAAGGAAAGCAGGAGTCTTCTTTGAACCTGAGCAGGTTTTGCGATATGTGGAAGACCCGGATGCCGTTAGGAGCCACGAACAGCTGGTGCATGATTACTTAGAGTTTAAAGTTCTAATGATGAGACTGGATCCATCTGAAGAAGACAGTGATGACTCTGGCAATGGAGGAAGGGAAAGTCCTGTTGGTGAAGGACAGATTTTTGACCTTGAGGGAAATCCCATCGCTAAGGCACGTGATAAGCGTGCTGCTAAACCAAGAAAGGTGATCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6KCD5	Nipped-B-like protein OS=Mus musculus OX=10090 GN=Nipbl PE=1 SV=1
Q6KC79	Nipped-B-like protein OS=Homo sapiens OX=9606 GN=NIPBL PE=1 SV=2
F1QBY1	Nipped-B-like protein B OS=Danio rerio OX=7955 GN=nipblb PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002809 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12765 all species →	Cohesin_HEAT	HEAT repeat associated with sister chromatid cohesion	Repeat	Interproscan
PF12830 all species →	Nipped-B_C	Sister chromatid cohesion C-terminus	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR026003 all species →	Repeat	HEAT repeat associated with sister chromatid cohesion protein	Interproscan
IPR024986 all species →	Domain	Sister chromatid cohesion C-terminal domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR033031 all species →	Family	Scc2/Nipped-B family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21704 all species →	NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0034087 all species →	Biological Process	establishment of mitotic sister chromatid cohesion	Interproscan
GO:0061780 all species →	Biological Process	obsolete mitotic cohesin loading	Interproscan
GO:0071169 all species →	Biological Process	establishment of protein localization to chromatin	Interproscan
GO:0090694 all species →	Cellular Component	Scc2-Scc4 cohesin loading complex	Interproscan
GO:1990414 all species →	Biological Process	replication-born double-strand break repair via sister chromatid exchange	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSTIFP00000036720.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →