Genomic Location: BLFP01004217.1:1017713...1029970
NR annotation: KAJ7394400.1, 40S ribosomal protein S4 [Desmophyllum pertusum]
Species Montipora efflorescens · all data for this species · gene families
| CDS |
| ENSTIFT00000041191 |
| Transcript |
| ENSTIFT00000041191 |
| Protein |
| ENSTIFP00000038222.1 |
| UniProt accession | Description |
|---|---|
| Q90YS0 | Small ribosomal subunit protein eS4 OS=Ictalurus punctatus OX=7998 GN=rps4 PE=2 SV=3 |
| Q642H9 | Small ribosomal subunit protein eS4 OS=Danio rerio OX=7955 GN=rps4x PE=1 SV=3 |
| P47961 | Small ribosomal subunit protein eS4 OS=Cricetulus griseus OX=10029 GN=RPS4 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006501 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08071 all species → | RS4NT | RS4NT (NUC023) domain | Domain | Interproscan |
| PF00900 all species → | Ribosomal_S4e | Ribosomal family S4e | Family | Interproscan |
| PF00467 all species → | KOW | KOW motif | Family | Interproscan |
| PF16121 all species → | 40S_S4_C | 40S ribosomal protein S4 C-terminus | Family | Interproscan |
| PF01479 all species → | S4 | S4 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR041982 all species → | Domain | Small ribosomal subunit protein eS4, KOW domain | Interproscan |
| IPR005824 all species → | Domain | KOW | Interproscan |
| IPR013843 all species → | Domain | Small ribosomal subunit protein eS4, N-terminal | Interproscan |
| IPR000876 all species → | Family | Small ribosomal subunit protein eS4 | Interproscan |
| IPR038237 all species → | Homologous_superfamily | Small ribosomal subunit protein eS4, central domain superfamily | Interproscan |
| IPR013845 all species → | Domain | Small ribosomal subunit protein eS4, central region | Interproscan |
| IPR014722 all species → | Homologous_superfamily | Large ribosomal subunit protein uL2, domain 2 | Interproscan |
| IPR018199 all species → | Conserved_site | Small ribosomal subunit protein eS4, N-terminal, conserved site | Interproscan |
| IPR032277 all species → | Domain | Small ribosomal subunit protein eS4, C-terminal domain | Interproscan |
| IPR036986 all species → | Homologous_superfamily | RNA-binding S4 domain superfamily | Interproscan |
| IPR002942 all species → | Domain | RNA-binding S4 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11581 all species → | 30S/40S RIBOSOMAL PROTEIN S4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0022627 all species → | Cellular Component | cytosolic small ribosomal subunit | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02987 | RP-S4e, RPS4; small subunit ribosomal protein S4e | - | Ribosome | ko03011 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
