Gene detail

Detailed information of ENSTIFP00000043498.1 in Montipora efflorescens

Genomic Location: BLFP01004562.1:1023636...1087448
NR annotation: PFX24089.1, Catenin beta [Stylophora pistillata]
Species Montipora efflorescens · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSTIFT00000046813

ATGTcaagatccaagatggcggcggaTCGGTCTGAAATGTCTTGTTCTATTAAAATGCACCTCTCTGATAACGAAACAAAATCTAGAGAGCATAGTGATCACGGAAAAGACCCAGCAAAACAGTCGCCCGGATCATCAAGGGTAGaaaaattgtgtaaaacagTGGCATTTCTCATTGTCCTCTGGTCAATTCGTATCAATCTCGCGCGGGTTCTGCGAGAAGGCTCTGACACTTGTCTCAAAATGATGAATTTCGGCCAATGGCGAGAAAGTTTTTGGCAGCCGTATGGATGCATGATGCACTCTTATACTTCAAGTGAATTGAGGACCTGTTTACAGCACCACCCTGTAGCTTTTATTGGGGATTCAAGAACACGGAGTCTTTATTATCATCTGGTACAGGCAATAAGTCTAAAAACAGTGAAAGATGAAGGAAAAGCTTggattacattaatttttttgtacattcatttattttttttacagaatCCAAAAAAAAGCCCACATCTCATTATAACTGGAGGGGGAACAGTGAATAATCTAACAAAGGTTAAAAGATCAATGGAAATGTTAgtggcaaaaaagagaaatgagAGTGAGACGATGCAGATGCAGGCCATCAAGAAAACAAGTCTCTTTCCACCCTCACCTGCTATCATTTGGGTTCAACAAGagATTATTCATCTACCAGAAAATTCCTCAGTAATTGTGATGTGGGCTTCATATAATTCAGCTCGCCAAAGACCTCAAGCATCACTGGATGGCATTGTGTTGTTCTTGATGATGTTCGTCTGTCGGCATCTGTGGCCTGCTGAACCTGGTGGCTCTGGTGgtGCTGAACCAACCACCCCAGGGGGTCGCCCTAGTTTCTCATTGCGCTGGGTTTATTCCAATAAGATGTACCCTGTCATGAAGGCATTATTTAAACTGGCGATTATaacgttttatttttatctatGCGACAGgacaaacttgtttttcaaggaaCAAAAGGAATATAGTCGTGTTGTCTTTGTGCTctttttaatgattttcttgGTACTTGGAGCTTTGACGTGGGTCCCTGCTGAACAGGTCTTAACTAGAATGAATATCCTTGTTGCGGTGCTGTGTTTAGCCATGGGTCGTCCTTAtcagttttattattttgtaccaCTGATATCGTTTTGGTTTGTGGTGATTTACGTTGTCTTAGCTTCCTGGCCCAGAGTCACGGCTGCCATTGTTAAGGATAacaacaagctttattttgCAATATTGTTCAAGTTCTTTATACTCTTCGTCGGAATTTCTATTATTTGGAGCTCACCAACATTTTGTCAATGGATATTTTCCCAGTGGGCAATTAAAGAATTGTTTATTGATGAGAATGAGAGCGTTAGGGAGTGGTGGTTTAGGTCATGGCTAGACAGATATATTGCATTGTTTGGAATGGTAACAGCCTTCGCATATTGCACCGCCAAATACTTTAGATTActtgatgataacaataaaagAGCTTTGTTCTCTGGACCAATAGGAGTTGCTTGTGTCTTGTTTGCTGCCATTATAACAGCTTTTattcttttaagaaatgttcCTGGCTTATTGAGGGCAAAATTTAGTAAATTTTACGCGTGGGTTGGTTCCATATCCCTTGAGTTGTTTATAGCACAATATCACATTTGGCTCGCCCACGACACTAAAGGCGTTCTGATATTGATTCCAGAACGGCCTATCCTCAACGTCGTCATGACAACGTTTGTATTCGTTTgtgattacagattccgaaccattgatCCAGTGGTGATTTATTTTATGATTGAAATGTTTCGGTTTCTGTTTGTTTCAGTTGTCACTATGGAGACCAGCAGAATGGGGATTCCTCATGGTGAAATGAGTAAACAAGAGCAAACGGCAATGTGGCAGCAACAGTATCATGACTCTGGCATTGTGTCAGGTGCTACAACCACAACTCATTCAGTGAAaggcgatgatgatgacgattacATGAAGACTTCTCATATGACATTTGAATGGGAGCAGGGGTTCTCAGACCAGGACATGCATGCAATGAATGAACAGTTTGTCTCAACAAGGAGTTTTCTTGTTAGCAGCCAATATTTTTCTAAGGGCTGCTATTTGCCAGTGAAAAGAGGAAATAATTATGATGATGCTGATCTTGCAACTCGTGCTATTCCTGAACTGACCAAATTATTGAATGATGAAGACCAGGTGGTTGTGGGCCAAGCTGCCATGATGGTGCATCAGCTTTCCAAGAAGGATGCCAGCCGTCATGCCATCATGAATTCACCGCAAATGGTTGCCACTCTTGTGAAAGCCCTGAACAACTCCAGTGATGCTGAGACAACGCGCTGCGCAGCTGGCACTTTGCACAACTTATCTCACCACAGgcAAGGTTTGCTATCCATCTTCAAATCTGGTGGCATCCCAGCTCTTGTGCGATTACTTGGCTCTCCTGTAGAAGCAGTTGTGTTCTATGCCATCACAACTCTCCACAATCTCTTGATGCACCAAGAAGGTGCCAAAATGGCTGTCAGGCTTGCTGGAGGTTTGCAGAAAATGGTAGCCCTGCTGAGTCGAACAAATGTCAAGTTTCTTGCCATTGTGACAGACTGTCTTCATGTTCTTGCTTATGGCAACAAGGAAAGCAAGCTGATTATCTTGGCATCAGGTGGACCTGCTGAATTGGTGCGCATTATGAGAACCTACACTTATGAGAAGCTTCTTTTTACAACCAGCCGTGTGCTGAAAGTGCTATCTGTAGACACAGATAACAAGCAGGCCATTGTTGAGGCTGGAGGAATGCAGGCTCTTGCCATGCATTTAGGTCATCAAAGCAACAGACTGGTCCAGAACTGCCTATGGACTCTGCGTAATCTGTCAGATGCTGCAACCAAAGAGGAAGGGCTCGATAACCTGCTTCAAATGTTGGTTCAGCTGCTTTCGTCCAATGACATCCAAGTGGTGACATGTGCTGCTGGAGTCTTGTCAAATCTTACGTGTAATAACCCAGGCAATAAACAACTTGTCTACAGATTTGGTGGCATTGAGGCACTTGTCAGGACCTGCATGCAGGCTGGAGACAGCGAGGAGATTACCGAACCAGCGGTTTGTGCCCTTCGTCATCTAACAAGTCGTCACGAAGATGCTGAAAAAGCCCAGAATGCAGTGCGCGTTCATTTTGGCTTACCAGTCTTGGTGAAATTGCTCTACCCACCATCACGCTGGCCACTTATCAAGGCAGTGATTGGACTCATGAGAAATCTTGCCCTGTGTCCATTGAACCATACTCCGATCCGAGAACATGGAGGTCTGCCTCAACTGGTCCAACTCATGATGCGTTCTTACCAAGATATGCAAAGGAGACCTGGGCAGAGTGTTCTGATAGATAATGTCAGAATGGAAGATATTGTGGATGGGTGTGTGGGTGCGCTTCATATTTTGGCACGTGAGGCACACAACAGGGCTGTCATCCGCAGTCTTCACTGCATTCCTCTATTTGTACAGCTTCTTTACTGTCCAATCGAAAATATCCAACGTGTTGCTGCAGGAGTACTCTGTGAATTGGCCCAAGACAAAGAAGGTGCTGAGGCGATTGAGGCTGAAAATGCAACTGCCCCTCTAACAGACCTGCTGCATTCAAGAAACGAAGGCATTGCTGCATATGCAGCTGCTGTACTCTTCCGTATGTCAGAGGACAAGTCCCAAGACTACAAGAAGCGTCTCTCCGTTGAGCTGACTAGCTCATTGTTCCGTGAAGATGCACCATGGCCAGAGcCAATGGATGGTGACTTTCCTGATCCCAGCTACAACATGCCACCTGGTGCAGGGTATGGTTATCCACATGACGGCTTTGATTATAACCAGCCAATGGAGTATTCTCATGAAGCTGGTTATGATTTTCATCATGGGGACCCTGGAATGCAGCCTCTTGGACATCCCCCTGCCCGTGGGGGCACCTGGTACGATACTGATCTGTGA

Transcript

ENSTIFT00000046813

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35224	Catenin beta OS=Urechis caupo OX=6431 PE=2 SV=1
P35223	Catenin beta OS=Tripneustes gratilla OX=7673 PE=2 SV=1
Q7QHW5	Armadillo segment polarity protein OS=Anopheles gambiae OX=7165 GN=arm PE=3 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006397 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF07779 all species →	Cas1_AcylT	10 TM Acyl Transferase domain found in Cas1p	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013284 all species →	Family	Beta-catenin	Interproscan
IPR012419 all species →	Domain	Cas1p 10 TM acyl transferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45976 all species →	ARMADILLO SEGMENT POLARITY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0019903 all species →	Molecular Function	protein phosphatase binding	Interproscan
GO:0035257 all species →	Molecular Function	nuclear receptor binding	Interproscan
GO:0045294 all species →	Molecular Function	alpha-catenin binding	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0140297 all species →	Molecular Function	DNA-binding transcription factor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSTIFP00000043498.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →