Genomic Location: BLFP01005074.1:639071...641342
NR annotation: XP_015762812.1, PREDICTED: coatomer subunit gamma-2-like [Acropora digitifera]
Species Montipora efflorescens · all data for this species · gene families
| CDS |
| ENSTIFT00000047755 |
| Transcript |
| ENSTIFT00000047755 |
| Protein |
| ENSTIFP00000044345.1 |
| UniProt accession | Description |
|---|---|
| Q66JI9 | Coatomer subunit gamma-2 OS=Xenopus tropicalis OX=8364 GN=copg2 PE=2 SV=1 |
| A2VE21 | Coatomer subunit gamma-2 OS=Bos taurus OX=9913 GN=COPG2 PE=2 SV=1 |
| Q9QXK3 | Coatomer subunit gamma-2 OS=Mus musculus OX=10090 GN=Copg2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005625 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08752 all species → | COP-gamma_platf | Coatomer gamma subunit appendage platform subdomain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009028 all species → | Homologous_superfamily | Coatomer/calthrin adaptor appendage, C-terminal subdomain | Interproscan |
| IPR012295 all species → | Homologous_superfamily | TBP domain superfamily | Interproscan |
| IPR013041 all species → | Homologous_superfamily | Clathrin adaptor, appendage, Ig-like subdomain superfamily | Interproscan |
| IPR013040 all species → | Domain | Coatomer, gamma subunit, appendage, Ig-like subdomain | Interproscan |
| IPR017106 all species → | Family | Coatomer gamma subunit | Interproscan |
| IPR037067 all species → | Homologous_superfamily | Coatomer, gamma subunit, appendage domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10261 all species → | COATOMER SUBUNIT GAMMA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0016192 all species → | Biological Process | vesicle-mediated transport | Interproscan |
| GO:0030117 all species → | Cellular Component | membrane coat | Interproscan |
| GO:0005198 all species → | Molecular Function | structural molecule activity | Interproscan |
| GO:0030126 all species → | Cellular Component | COPI vesicle coat | Interproscan |
| GO:0000139 all species → | Cellular Component | Golgi membrane | Interproscan |
| GO:0005783 all species → | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0005793 all species → | Cellular Component | endoplasmic reticulum-Golgi intermediate compartment | Interproscan |
| GO:0006888 all species → | Biological Process | endoplasmic reticulum to Golgi vesicle-mediated transport | Interproscan |
| GO:0006891 all species → | Biological Process | intra-Golgi vesicle-mediated transport | Interproscan |
| GO:0009306 all species → | Biological Process | protein secretion | Interproscan |
| GO:0072384 all species → | Biological Process | organelle transport along microtubule | Interproscan |
ENSTIFP00000044345.1.Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |