Genomic Location: BLFP01005062.1:986917...993350
NR annotation: XP_015751243.1, PREDICTED: exosome complex component RRP46-like [Acropora digitifera]
Species Montipora efflorescens · all data for this species · gene families
| CDS |
| ENSTIFT00000049008 |
| Transcript |
| ENSTIFT00000049008 |
| Protein |
| ENSTIFP00000045513.1 |
| UniProt accession | Description |
|---|---|
| Q9NQT4 | Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1 |
| Q9CRA8 | Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1 |
| Q9LX74 | Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP46 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006435 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03725 all species → | RNase_PH_C | 3' exoribonuclease family, domain 2 | Domain | Interproscan |
| PF01138 all species → | RNase_PH | 3' exoribonuclease family, domain 1 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR020568 all species → | Homologous_superfamily | Ribosomal protein uS5 domain 2-type superfamily | Interproscan |
| IPR027408 all species → | Homologous_superfamily | PNPase/RNase PH domain superfamily | Interproscan |
| IPR036345 all species → | Homologous_superfamily | Exoribonuclease, PH domain 2 superfamily | Interproscan |
| IPR050080 all species → | Family | Ribonuclease PH | Interproscan |
| IPR015847 all species → | Domain | Exoribonuclease, phosphorolytic domain 2 | Interproscan |
| IPR001247 all species → | Domain | Exoribonuclease, phosphorolytic domain 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11953 all species → | EXOSOME COMPLEX COMPONENT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000176 all species → | Cellular Component | nuclear exosome (RNase complex) | Interproscan |
| GO:0000177 all species → | Cellular Component | cytoplasmic exosome (RNase complex) | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0016075 all species → | Biological Process | rRNA catabolic process | Interproscan |
| GO:0034427 all species → | Biological Process | obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | Interproscan |
| GO:0034475 all species → | Biological Process | U4 snRNA 3'-end processing | Interproscan |
| GO:0071028 all species → | Biological Process | nuclear mRNA surveillance | Interproscan |
| GO:0071051 all species → | Biological Process | poly(A)-dependent snoRNA 3'-end processing | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12590 | RRP46, EXOSC5; exosome complex component RRP46 | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
