Genomic Location: BLFP01005029.1:631468...648236
NR annotation: XP_044182308.1, DNA/RNA-binding protein KIN17-like [Acropora millepora]
Species Montipora efflorescens · all data for this species · gene families
| CDS |
| ENSTIFT00000050998 |
| Transcript |
| ENSTIFT00000050998 |
| Protein |
| ENSTIFP00000047388.1 |
| UniProt accession | Description |
|---|---|
| Q8K339 | DNA/RNA-binding protein KIN17 OS=Mus musculus OX=10090 GN=Kin PE=1 SV=1 |
| O60870 | DNA/RNA-binding protein KIN17 OS=Homo sapiens OX=9606 GN=KIN PE=1 SV=2 |
| Q9ZVU5 | KIN17-like protein OS=Arabidopsis thaliana OX=3702 GN=KIN17 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003915 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10357 all species → | Kin17_mid | Domain of Kin17 curved DNA-binding protein | Family | Interproscan |
| PF18131 all species → | KN17_SH3 | KN17 SH3-like C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014722 all species → | Homologous_superfamily | Large ribosomal subunit protein uL2, domain 2 | Interproscan |
| IPR019447 all species → | Domain | DNA/RNA-binding protein Kin17, WH-like domain | Interproscan |
| IPR041995 all species → | Domain | Kin17, KOW domain | Interproscan |
| IPR038254 all species → | Homologous_superfamily | DNA/RNA-binding protein KIN17, WH-like domain superfamily | Interproscan |
| IPR037321 all species → | Family | KIN17-like protein | Interproscan |
| IPR041330 all species → | Domain | KN17, SH3-like C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12805 all species → | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003690 all species → | Molecular Function | double-stranded DNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006260 all species → | Biological Process | DNA replication | Interproscan |
| GO:0006974 all species → | Biological Process | DNA damage response | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13102 | KIN; DNA/RNA-binding protein KIN17 | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora efflorescens tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora efflorescens, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
