Gene detail

Detailed information of ENSVBPP00000002072.1 in Meandrina meandrites

Genomic Location: not available for this species
NR annotation: CAH3161922.1, unnamed protein product [Pocillopora meandrina]
Species Meandrina meandrites · all data for this species · gene families

Sequence

CDS

Transcript

ENSVBPT00000002268

GGTTGGCGCCATTTTGTGCATTTAGAGTTGATGTAGTTCACTGATTTCAGCTGGAATTTATCACATTTCTCCGCCATGGCTGCCGAAGGTGGCTACCTAACCGAACTTCTAACTGAAAAGGACAACTTAGATCCCTCTTTTGTACATTCAATGCGTTTATTAACGGAAGAAATTAACAGAATGCAAAATGGCGGAGCCCTTCCAGTTGGACAAGTAAAAAAGCCAAAAgtagaaacaacaacaaatggaAGTTCTATAGCACCTCTGTCAGAAAGTCCTGTGGTGTCTAAACCATTACCTGCTGTTGGCCAGCTCCCCCCTGTTGCAAGCCCTGAGACCCCACCTAATCCTAGACCACCACATCAATTCCGTAGACCTGCTGATGTTTTTGATAGCAAGCTTTATCAGCCCACAAAATTGAGTGAAAAAGTATTCATCCCAGTAAAAGATTACCCCAAGTTTAACTTTGTAGGAAAGTTGCTTGGTCCTAGAGGCAATACCTTCAAGAGACTCCAGGCAAATACTGGTACAAAAATGTCCATCCTTGGCAAAGGCTCAATGAGAGAGAAGGAAAAGGAGGAAGAGCTGCGAAGCTCTGGTGATCCGAAATATACACACCTTGATGAAGATCTCCATGTCCTCATTGAAGTTGAAGCCCCTCCAGGACAGGCTCATGCCAGATTAGGTCTTGCTATtgaagaaattaagaaatttcttGTACCTGAAAACAATGATGAAATCCATCAGGAACAGATGCGAGAAATGGCAATTCTTAATGGCATGGAGGAGCCAGTACCCGCAGCAGCACCAGTTGCAGTCCCTGCACCTGTACCTAGGGGACGCCCACATGCCAGAGGGGTGCCACACCATCCTCATCATCCTGCGCATCATGGTCGAGGTGCTCCAGTTCCACGTGTGGCACCTATTCCAAGACCTAGAGGACCCCCTGTTGGTCATGTAAGTGTAACAGCAGCACGCTCAGCAGCAGGGCTTGGGCCTTCTTCGCCTACAGTAGCTCATGCAGCACCAAGGGCAGCAGCAGTCCCTGGTGATCCTTATGGAGCAGTGCATGCTCTTCCAGCAACTGTTGGGATTCAACTGCTGACTTCAGGAGAACAAGTGATTGGTTATGAACCTTATGAGCCTGGTTATGAATTTGAAGCAGCTTATCCTGAAGCTGGTGACACTGTGTACTATGAGTATGGACAGCCAGAGGTGTTTGAAACAGCATATCCAGCTCCAACCAGAGTTCCAGTGAGTACATCTGCAACTTTCAAGGCACCTCCAGCTCGTACTGTCAAGAAAATTGTTCGTGAAGCAGCATACCCTTATTGAAGTAGTAAACAATTTTTCTAGGGATTCTAGTTTGAATCTAAAGCCTTGTTAATAGAGTTTTGATAAATTTCTTACAAATTATTATGAGCACTCGCCTACATTCCGTGTTAAAAGGAAAGCAGTGTACTTATTTACCATTCTGTTAGTGAAGAGATGACAACTATTTTCATAAGTCTGTTTTAGTTATGGTTTCTTTTGATAAATGGTAATcaatttaaattgttttctgTACATAATGGAAGAAATTGTGTGCATGGAGCCTTCGGTAAACTTGGATAAAGAAGAAAGATCAACACCAGTAGTGCTTAATCAAATAATACAGTAATATCCCATTCATTTAAACttcataaaataatattttggttAAACAGTTAGCATAAAAACACTTTTTCAATTATTAGAAGTCGTCATAATATTCcaggtttgtttttttgctgAAATGTAATCCTAATGTTATCCAATATATTGTGTAGTGTATAAAACATGTCAACTTGTGTTAAGCAAGATAAAGTATGTAACATGTATAATCATACTCTTTGCCCTTTCATCTATGAGTTCAtagatttattttctttcataaTGTTTAAATTATGTTAAACTGCATGTCATGATGTCTGATTCACCAAACGTTTAACTTGTAAGGTTTTCATAAACAAGGACATCGTCAACCACTAAATggtcaatttttaaaaaaactttattacttaaaaagcttgtatgttaaaATTAAATAACATCTTAAGCTACCTGTTATTATTGAACTCAATAAAGTGATAAACATTGCTAAACTGTTTGGTCTTTCCACTATGGTTGTTTATAAGAAACTGAAACATGTGTAAGTCACTGGAGATTCTTAACTATAAAGAATAATTCCTTGAAATGAACACTGAactaaatattat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WU01	KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus OX=10090 GN=Khdrbs2 PE=1 SV=1
Q920F3	KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus OX=10116 GN=Khdrbs2 PE=1 SV=1
Q5VWX1	KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens OX=9606 GN=KHDRBS2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001209 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF16274 all species →	Qua1	Qua1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR045071 all species →	Family	KH domain-containing BBP-like	Interproscan
IPR032571 all species →	Domain	KHDRBS, Qua1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11208 all species →	RNA-BINDING PROTEIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0048024 all species →	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSVBPP00000002072.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.