Gene detail

Detailed information of ENSVBPP00000010337.1 in Meandrina meandrites

Genomic Location: chr10:26861870...26878138
NR annotation: XP_020624288.1, RNA cytidine acetyltransferase-like [Orbicella faveolata]
Species Meandrina meandrites · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSVBPT00000010774

ATGGTTATTGATGATCAGTTGAATATTCTTCCCATCTCCTCTCATACTCTTACAATCACTGCATTACCACCAAAATCAAAGgaagaatCCATGAGTGCGAATGAAATTGAGCTGAAAAGTTTGAAGGAATCATTACAAGACACACAACCTGTTGGAGCAATTGTTAACTGCTGTCGAACTCTTGACCAGgcAAAAGCAGTTCTCAAGTTTGTTGAAGCCATATCAGAGAAGACCCTGAGGAGTACAGTGACCCTAACTGCAGCCCGCGGACGTGGAAAATCAGCTGCCTTGGGACTGTCTTTAGCCTCTGCCGTTGCATTTGGATACTCAAACATGTTTGTTACCTCACCAAGCCCAGAAAATCTACACACTTTGTTTGAGTTTGTCTTTAAAGGATTTGATGCACTGGAATTTCAGgAACATCTTGATTATGAGTTAGTACAGTCGACCAACCCAGAATTCAACAAGGCAGTTGTAAGAGTGAATATTTTCAGGGACCACCGACAGACAATTCAGTACATTCACCCATCAGATGCACACAAACTCGGCCAGGCAGAGCTAGTGGTTATTGATGAAGCTGCTGCCATTCCTCTTCCACTGGTGAAAGCTCTTATGGGACCATACCTGGTATTTCTCTCATCAACTGTCAATGGATATGAGGGAACTGGCCGATCACTCTCCTTGAAACTAATCCAACAGCTAAGAGAACAGAGTACAACTTTGGGGTCTGCCAACAAAGGGAACAGCTCTGGTCCTCTTGGCCGCAGCCTTCATGAGATAACACTGAACGAGTCAATCCGTTATGCTCCGGGAGACGAGGTGGAGAGGTGGCTAAACCACCTTCTTTGTTTGGATGCTACTGTGGTGCAGAAGCTGACCTCTGGTTGTCCGCTGCCTGAAAACTGTGATTTATATTACGTTAATCGAGACACACTGTTTTCATACCACAAAGCATCTGAAGTTTTCTTGCAAAGACTGATGGCTCTTTATGTGGCTTCACATTACAAGAACACTCCGAATGATCTTCAGCTATTATCTGATGCACCAGCACACCACATCTTTTGTCTTCTGGGTCCTGTTGATCCAGCTCAGAATACTTTGCCTGAAGTGTACTGTGTCCTACAGGTGTGCCTTGAAGGTGATATTTCAAAGTCGACCATCATGAGTAGTCTGTCACGCGGCAAGAGAGCATCCGGTGACCTTATACCCTGGACAATCTCACAGCAGTTTAATGATCATGACTTCGCTGGGCTTTCTGGAGGGAGGATTGTGCGAATCGCTACCCACCCTGACTTCCAAGGGATGGGATATGGACGACGAGCGATGAACCTTCTTATTCAGTATTATGAAGGGAACATCCCCAGTTTAGCTGAGGAAGGCCAAGAAGATAAGCAAATTTCAACTTTGACTCGAGATGAGGAAGTTGGTTTGTTGGAAGAGGTGATTTCTCCAAGAAGTAATCTGCCACCTTTGTTGTTAAAACTCAGTGAAAGACCAGCTGAACAACTCGACTATCTTGGTGTGTCATATGGATTGACGGCACAACTGCTAAGATTCTGGAAGAAATCTGACTTTGTTCCTGTTTACCTGCGCCAAACTCCAAACGACTTGACTGGTGAACACTCTTGCATTATGTTGAGACGCCTGGGTGATTCAGAAGAAGACAATAATGACAACTGGCTGCAAGCATACATGGCTGATTTCTGCAGACGCTTCCTTTCCCTCCTTTCGTATCAGTTTCGCAGTTTCTATCCATCATTAGCGCTGAGTATGCTGAAAAACAAGAATACTACCCAAGGAGAGAAAGgTTTAACAAAAGGTGAATTGGAAGCCGTCCTTACAACGTACGACATAAAAAGATTGGATCTCTATTCTCGGAATATGGTGGACTACCATCTTATTACAGATTTACTTCCAGCGGTTTCGAGGCTGTTTTTCCTTCAGAAGCTGGACTTTGACCTTTCTGCAGTCCAATCCgcAATTCTTCTTGGACTTGGCCTTCAACACAAGACTATAGAAACCCTTGAGaaagaattGGAGCTTCCTTCTTCCCAACTACTTGGGCTTTTTAACAGAACTATAAGAAAAGTTGTACAGTGTTTTAATTCAGTTCTGGAGTCGTCCTTCGACAGCCAAGTAACGAAAGGAAGAGAAGTCTCAATGGAGCCATTAACTCAGGGACTTCAAGAAGATCTGGAAGAAgctgcaaaggaattgaaagaGAAGCAAAAGAAAGAACTggaaaaactaaaaaatattGATCTTAGCGAGTTTGCCATATCGGGAAAGGATGAAGATTGGCAAGAGGCTCTTAGCAGCAGCAAAAACAATGTTAATATGATCAGCGTGACAAGTACAAAGCGAAAGGCAAAGCCGTCCGTTGACCAGAAAAGTTCACACAAGAAACCAAAGAAATCTAAACAGAAACATCACACTGGATGA

Transcript

ENSVBPT00000010774

ATTTATTTTGTCACTGACGTCATGCAAGAGCTGTATGGTTATTGATGATCAGTTGAATATTCTTCCCATCTCCTCTCATACTCTTACAATCACTGCATTACCACCAAAATCAAAGgaagaatCCATGAGTGCGAATGAAATTGAGCTGAAAAGTTTGAAGGAATCATTACAAGACACACAACCTGTTGGAGCAATTGTTAACTGCTGTCGAACTCTTGACCAGgcAAAAGCAGTTCTCAAGTTTGTTGAAGCCATATCAGAGAAGACCCTGAGGAGTACAGTGACCCTAACTGCAGCCCGCGGACGTGGAAAATCAGCTGCCTTGGGACTGTCTTTAGCCTCTGCCGTTGCATTTGGATACTCAAACATGTTTGTTACCTCACCAAGCCCAGAAAATCTACACACTTTGTTTGAGTTTGTCTTTAAAGGATTTGATGCACTGGAATTTCAGgAACATCTTGATTATGAGTTAGTACAGTCGACCAACCCAGAATTCAACAAGGCAGTTGTAAGAGTGAATATTTTCAGGGACCACCGACAGACAATTCAGTACATTCACCCATCAGATGCACACAAACTCGGCCAGGCAGAGCTAGTGGTTATTGATGAAGCTGCTGCCATTCCTCTTCCACTGGTGAAAGCTCTTATGGGACCATACCTGGTATTTCTCTCATCAACTGTCAATGGATATGAGGGAACTGGCCGATCACTCTCCTTGAAACTAATCCAACAGCTAAGAGAACAGAGTACAACTTTGGGGTCTGCCAACAAAGGGAACAGCTCTGGTCCTCTTGGCCGCAGCCTTCATGAGATAACACTGAACGAGTCAATCCGTTATGCTCCGGGAGACGAGGTGGAGAGGTGGCTAAACCACCTTCTTTGTTTGGATGCTACTGTGGTGCAGAAGCTGACCTCTGGTTGTCCGCTGCCTGAAAACTGTGATTTATATTACGTTAATCGAGACACACTGTTTTCATACCACAAAGCATCTGAAGTTTTCTTGCAAAGACTGATGGCTCTTTATGTGGCTTCACATTACAAGAACACTCCGAATGATCTTCAGCTATTATCTGATGCACCAGCACACCACATCTTTTGTCTTCTGGGTCCTGTTGATCCAGCTCAGAATACTTTGCCTGAAGTGTACTGTGTCCTACAGGTGTGCCTTGAAGGTGATATTTCAAAGTCGACCATCATGAGTAGTCTGTCACGCGGCAAGAGAGCATCCGGTGACCTTATACCCTGGACAATCTCACAGCAGTTTAATGATCATGACTTCGCTGGGCTTTCTGGAGGGAGGATTGTGCGAATCGCTACCCACCCTGACTTCCAAGGGATGGGATATGGACGACGAGCGATGAACCTTCTTATTCAGTATTATGAAGGGAACATCCCCAGTTTAGCTGAGGAAGGCCAAGAAGATAAGCAAATTTCAACTTTGACTCGAGATGAGGAAGTTGGTTTGTTGGAAGAGGTGATTTCTCCAAGAAGTAATCTGCCACCTTTGTTGTTAAAACTCAGTGAAAGACCAGCTGAACAACTCGACTATCTTGGTGTGTCATATGGATTGACGGCACAACTGCTAAGATTCTGGAAGAAATCTGACTTTGTTCCTGTTTACCTGCGCCAAACTCCAAACGACTTGACTGGTGAACACTCTTGCATTATGTTGAGACGCCTGGGTGATTCAGAAGAAGACAATAATGACAACTGGCTGCAAGCATACATGGCTGATTTCTGCAGACGCTTCCTTTCCCTCCTTTCGTATCAGTTTCGCAGTTTCTATCCATCATTAGCGCTGAGTATGCTGAAAAACAAGAATACTACCCAAGGAGAGAAAGgTTTAACAAAAGGTGAATTGGAAGCCGTCCTTACAACGTACGACATAAAAAGATTGGATCTCTATTCTCGGAATATGGTGGACTACCATCTTATTACAGATTTACTTCCAGCGGTTTCGAGGCTGTTTTTCCTTCAGAAGCTGGACTTTGACCTTTCTGCAGTCCAATCCgcAATTCTTCTTGGACTTGGCCTTCAACACAAGACTATAGAAACCCTTGAGaaagaattGGAGCTTCCTTCTTCCCAACTACTTGGGCTTTTTAACAGAACTATAAGAAAAGTTGTACAGTGTTTTAATTCAGTTCTGGAGTCGTCCTTCGACAGCCAAGTAACGAAAGGAAGAGAAGTCTCAATGGAGCCATTAACTCAGGGACTTCAAGAAGATCTGGAAGAAgctgcaaaggaattgaaagaGAAGCAAAAGAAAGAACTggaaaaactaaaaaatattGATCTTAGCGAGTTTGCCATATCGGGAAAGGATGAAGATTGGCAAGAGGCTCTTAGCAGCAGCAAAAACAATGTTAATATGATCAGCGTGACAAGTACAAAGCGAAAGGCAAAGCCGTCCGTTGACCAGAAAAGTTCACACAAGAAACCAAAGAAATCTAAACAGAAACATCACACTGGATGAATCTTGCGTCTGTTTATACCGTGGCAACTGTGGACCAGCAATGAAAAGCAACCTATCGCGATATCTTCCTCTGTTCGGCAGAGACTTCGAGATTCACCCGAACAATTGCGTACTGATAACGTTGTGGTGCAGAATTCTGTTTAGCTCAGCACTGAGCAACAAGGGAATCTTTTCAGTTAAAATCTCTGCGGATCTTATCAAGAGTAAAAATGACAGTAATTTAAACATTGGAAGCGAGTGGACAACAACAGCACAGAATTTTTTAATGACGTTAAAGAAAGGTGTGATCATTGAAGACGAACATTTTTCGAACGATCACTGAAGTTTCATTTCTGTACACGTGATTTCTTGAGAAATTATTGGCGTCAATCGTTTCTTGTTTATCGTCAGCTTATCATTTCAACGTCGTCCTCAATTTTGCTGAAAGACCCTAGTCAGAAACACGATTGCGcacttttgtttttatatttttgacAGAATGGCAAATAGAATACCTTTCTCGGGCATCAAGAGAGAATGTTAACTGTAAGAATGTTCGAGGACGCACGAAAACTACACCATTGGGCTTTATAGTATGTACACAGCAAGAGGCATTGTGGCACAACCTTgtccccagggcttttcccttctttgtGGGGGCGGTCTGgacccacgaagaagggaaaagccctggggacgaggttgattGTGGCAAAGTATGTCTAAAAAGGAGTAATTTGTATGCAGTGGTTTTAGTTTGTTAAAACCTAAATCCCGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H0A0	RNA cytidine acetyltransferase OS=Homo sapiens OX=9606 GN=NAT10 PE=1 SV=2
Q8K224	RNA cytidine acetyltransferase OS=Mus musculus OX=10090 GN=Nat10 PE=1 SV=1
Q55EJ3	RNA cytidine acetyltransferase OS=Dictyostelium discoideum OX=44689 GN=nat10 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003844 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05127 all species →	Helicase_RecD	Helicase	Domain	Interproscan
PF13718 all species →	GNAT_acetyltr_2	GNAT acetyltransferase 2	Family	Interproscan
PF13725 all species →	tRNA_bind_2	Possible tRNA binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033688 all species →	Family	RNA cytidine acetyltransferase NAT10	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032672 all species →	Family	TmcA/NAT10/Kre33	Interproscan
IPR007807 all species →	Domain	Helicase domain	Interproscan
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR027992 all species →	Domain	Possible tRNA binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10925 all species →	N-ACETYLTRANSFERASE 10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0008080 all species →	Molecular Function	N-acetyltransferase activity	Interproscan
GO:0016072 all species →	Biological Process	rRNA metabolic process	Interproscan
GO:0034470 all species →	Biological Process	obsolete ncRNA processing	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:1904812 all species →	Biological Process	rRNA acetylation involved in maturation of SSU-rRNA	Interproscan
GO:1990883 all species →	Molecular Function	rRNA cytidine N-acetyltransferase activity	Interproscan
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14521	NAT10, KRE33; N-acetyltransferase 10	EC:2.3.1.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →