Gene detail

Detailed information of ENSVBPP00000012135.1 in Meandrina meandrites

Genomic Location: :...
NR annotation: XP_020618141.1, protein Smaug homolog 1-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSVBPT00000012659

GATTAATAAAATTTTGCGTCGATTTCAGGGTTTGTCCTTAGCGAGCGACATGAAACCGGCACATCACACGCTATTTCGAGACCAAGTCAGCACTCTCGTGGAGTGGTTTGCCAACTGGAACGACTGTGAACAAACCATAGCGTTATACACACTGCTGAAGCGGATCTCAACCATTCAAGCGAGGTTCCTGTCGTTGATTCTGGAACACACTTTCCGGGACGACTCGTTTGAAGTTCAAATGATGCAGAGACGGGCAAACGATAAAGAATTTTTAAGTGGTTTGATACGAGAGAGTAAAGACTTTGCAGTTAAACAGTTGCTGATGCACCTGCCGCTCCTTAATCCACGAAACGACGAGGCAAGATATGAGTACCTTCATTTACTGCCCAAGATACTTCACCACACTGTGGAACATTCTGTGCATCAGGAGGAATGCCGTCAGCTCTTATCATTAGCTGTGGTGCATCCTGCTTTCCCGCCAGAGGAGCGCACTGCTCTTCATCGCTGGCTAAGCCAACTTGATAAGAGCCTTGGTGTACAGGAGAGGCTTCAAGCGACCAATTCGTTTATAACTGAAAATCCGGATGTTTTACCTAACACAGGTTGCGAGAACCTTGTAAGGCAGAACTATATGCGGGGCCGGATGAATGGCTGGCGAAACCAGCAGCTTGTTCATGTAGACTCTGGAATTGGCGGCTCATTTGAATCGCCGCCAATGCAATCCCACCTATCGATTTCGTCTTCTATGAGGAAGAGCCGATCAAACTCTCTAACCCCTCCACTGCCTATTGAAATCCAAGACTCCATTTTGGAGGATTACTCTGAAAATAGTGAGGTTGAAATTCGTCCGGGCAGGTCCCAGTCTTTTCCAGTGGATCCTCACAGATTAAATCATTCGCTTTCACCGCAGTCCTCGTTAGACAGTGAATTGGATGAAAATGGCTGTAGGCAGAGAGGAAGCAGTTTCAACGAAGATGCACGACCAGGCATGAAAGATGTGGGGTCATGGCTAAAAAATCTAAGATTGCATAAGTATGGCAGCCTGTTTTCTCAACTCTCTTATGAAGAGATGCTTGGCTTAAATGAAGACTACTTGGAAACTAAGGGTGTAACTAAAGGGGCCAGGAACAAGATTCTGTTGAGTATTAAAAAGCTGTCAGAAAGACCAGAAACATTGTCTCGTCTGGAAAAGGAAGTGCTCCAGCCAGGCAAACTTCAAGGAGTTCTAACTGGactgaaagaaataataattacGCCAATAAAACCGTTCAGCCCTGCCCCTTCTGAGGCTACCCATGGTGTTTCATATCCGCCGATACTGACAACAGAACAACCGGCATCCAATGTACCACCGCACCCAGACGACTTGGCTTCGCGAATTACAAGAGTTTTGGGCAAAGCTTGTACTCAGATTCTCGTGTCAAGAGCAGATGAGGAACATTGTAACACTTATCTTCAATTGTTGGACAGAGTTCTCATGCTTGAGGCATTTTCACAAAATCAAAAAGGACGAATTCAGTCATGGAAACAAGAATGCCAGAGACTGGTCAGACAAAGGCGGCCATCTCATGAGAACCGTGCAAGAGGGTGGTACAACATGGGCCACAATTCAGGGGAGTCCATAGGAGGGAGCACAGGGCCTCCTGCAGGTTCAGGGGTCATAAATAAGCGTCACAGGGGCTCACCTCGTAATCCTGCCAAGAATCCTGCTGGTCAGCTTCGAAGCAACAGTGCTGAGACACAAATGCACTCTAATAAACCAAGACTGGTGAGGTCCCATGCTGTGGTGGGAAGAACAAAGTCACTCCCTCTCAAACCAACACAACAAACAAGTGTTGTTCTTCCGCAGCAGCACTCGGCTGATCTTGAGAACATTGACGATGGTCTAGAGTCTCTTTGTCTTAGTGTTACAGAACATGCTCTTTCTGattCTATGGACCAGTCATTTGATTATAAATAGCATTTCACAAGCAGAGGTGACGTAACGTAAGCAACATGGTTGCTTTAAAAGTGCATACAGTGGCAACTGTCATTATTCAATCATGATGGAGCTAGTTATCCCATAGCAAACGCTTAGTCAAATTAGAAGACGACAGTATTGATATACGTAAAGATATAAGCCATGATAACTTCATTTATTATATTCAGCCTCATAGAGGTTAAATAATGTTAAGTGAAAATGTCATTCATCAGAGAGAGCTTGCTTATTGGCAGTAGAAAAACAGCCTTTAAATTGTTGATATTAAATATAAGTAAATACATTGTTATATTGATGCTAGTCCATTTGACTCTTTGTTTTTTTATTCTGATGCAAGGAAATTCCTGGTGGGAAATGCAGCTATTTAAGATCATTTTGTGTTTGACTTGTCTTTTTTTTGTGGTCTTTATTTTCACGACGAGTAGCACTCAAGATTACTGTCTCTGCAAATTTTCCTGTGCTTTGTAAACtggcttgtttttttttttgtcaagagtttagcaatttattttaaaatgtatttTCTTTGACTGAGATTCAATTTgtgttttccttttcttgttATATGTGTATAATAGTTCAACAACACCGAACACAATGAAGTCAACCactaaaaagttttttctctttttttgtgcctagtccaaacattttaaaacttgTACTGGTAACGGTTGTTCAGTTGTGTtatttaaggttacacaataccttcagaggtctacttttgtcgaaaaatttttttttggactaaaataaaagtttactttagatctaacatttccccaaaaattaaagtaaaatcttaaaactcacgcgagttatttcgaaaaaagggtttttaaataaaagttaataaaatagttaggtgtcataatcgtcatagcgcgttgattccccggcgatgtttttgcgcgaaacggccttagcagcgagctcttattacaaggacatcattagcattgttttgtttacatgtgattt

Protein

Uniprot

Uniprot term	Description
Q0IHW3	Protein Smaug homolog 1 OS=Xenopus tropicalis OX=8364 GN=samd4a PE=2 SV=1
Q5FWP2	Protein Smaug homolog 1 OS=Xenopus laevis OX=8355 GN=samd4a PE=2 SV=1
Q8CBY1	Protein Smaug homolog 1 OS=Mus musculus OX=10090 GN=Samd4a PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050897	Family	SMAUG/VTS1 RNA-binding	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR037093	Homologous_superfamily	Smaug, PHAT domain superfamily	Interproscan
IPR037634	Domain	Protein Smaug, SAM domain	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12515	STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000289	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0043488	Biological Process	regulation of mRNA stability	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K27396	SMG; protein Smaug	-	Messenger RNA biogenesis	ko03019	deepkoala