Detailed information of ENSVBPP00000014726.1 in Meandrina meandrites

Genomic Location: chr1:52637353...52650053
NR annotation: RMX50331.1, hypothetical protein pdam_00006904 [Pocillopora damicornis]
Species Meandrina meandrites · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7T2Z5Netrin receptor UNC5C OS=Gallus gallus OX=9031 GN=UNC5C PE=2 SV=1
Q6UXZ4Netrin receptor UNC5D OS=Homo sapiens OX=9606 GN=UNC5D PE=1 SV=1
Q8K1S2Netrin receptor UNC5D OS=Mus musculus OX=10090 GN=Unc5d PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004851 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17217
all species →
UPAUPA domainDomainInterproscan
PF00531
all species →
DeathDeath domainDomainInterproscan
PF00791
all species →
ZU5ZU5 domainFamilyInterproscan
PF07679
all species →
I-setImmunoglobulin I-set domainDomainInterproscan
PF00090
all species →
TSP_1Thrombospondin type 1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033772
all species →
DomainUPA domainInterproscan
IPR000884
all species →
RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR000488
all species →
DomainDeath domainInterproscan
IPR003599
all species →
DomainImmunoglobulin subtypeInterproscan
IPR007110
all species →
DomainImmunoglobulin-like domainInterproscan
IPR000906
all species →
DomainZU5 domainInterproscan
IPR013098
all species →
DomainImmunoglobulin I-setInterproscan
IPR003410
all species →
DomainHYR domainInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR037936
all species →
FamilyNetrin receptor UNC5Interproscan
IPR011029
all species →
Homologous_superfamilyDeath-like domain superfamilyInterproscan
IPR036383
all species →
Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR036179
all species →
Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR003598
all species →
DomainImmunoglobulin subtype 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12582
all species →
NETRIN RECEPTOR UNC5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0007165
all species →
Biological Processsignal transductionInterproscan
GO:0005042
all species →
Molecular Functionnetrin receptor activityInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0038007
all species →
Biological Processnetrin-activated signaling pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSVBPP00000014726.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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