Genomic Location: chr1:50436210...50451384
NR annotation: CAH3031210.1, unnamed protein product [Pocillopora meandrina]
Species Meandrina meandrites · all data for this species · gene families
| CDS |
| ENSVBPT00000015903 |
| Transcript |
| ENSVBPT00000015903 |
| Protein |
| ENSVBPP00000015340.1 |
| UniProt accession | Description |
|---|---|
| P79101 | Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus OX=9913 GN=CPSF3 PE=1 SV=1 |
| Q9UKF6 | Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens OX=9606 GN=CPSF3 PE=1 SV=1 |
| Q9QXK7 | Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus OX=10090 GN=Cpsf3 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001360 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11718 all species → | CPSF73-100_C | Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term | Domain | Interproscan |
| PF16661 all species → | Lactamase_B_6 | Metallo-beta-lactamase superfamily domain | Domain | Interproscan |
| PF07521 all species → | RMMBL | Zn-dependent metallo-hydrolase RNA specificity domain | Motif | Interproscan |
| PF10996 all species → | Beta-Casp | Beta-Casp domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050698 all species → | Family | RNA Processing Metallo-Beta-Lactamase Domain-Containing Protein | Interproscan |
| IPR021718 all species → | Domain | Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term | Interproscan |
| IPR022712 all species → | Domain | Beta-Casp domain | Interproscan |
| IPR001279 all species → | Domain | Metallo-beta-lactamase | Interproscan |
| IPR036866 all species → | Homologous_superfamily | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Interproscan |
| IPR011108 all species → | Domain | Zn-dependent metallo-hydrolase, RNA specificity domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11203 all species → | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0004521 all species → | Molecular Function | RNA endonuclease activity | Interproscan |
| GO:0004534 all species → | Molecular Function | 5'-3' RNA exonuclease activity | Interproscan |
| GO:0005847 all species → | Cellular Component | mRNA cleavage and polyadenylation specificity factor complex | Interproscan |
| GO:0006378 all species → | Biological Process | obsolete mRNA polyadenylation | Interproscan |
| GO:0006398 all species → | Biological Process | mRNA 3'-end processing by stem-loop binding and cleavage | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14403 | CPSF3, YSH1; cleavage and polyadenylation specificity factor subunit 3 | EC:3.1.27.- | Messenger RNA biogenesis | ko03019 | deepkoala |
Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
