Detailed information of ENSVBPP00000015862.1 in Meandrina meandrites

Genomic Location: chr1:67087059...67109631
NR annotation: XP_020619764.1, tyrosine-protein kinase BAZ1B-like [Orbicella faveolata]
Species Meandrina meandrites · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9UIG0Tyrosine-protein kinase BAZ1B OS=Homo sapiens OX=9606 GN=BAZ1B PE=1 SV=2
Q9Z277Tyrosine-protein kinase BAZ1B OS=Mus musculus OX=10090 GN=Baz1b PE=1 SV=2
A8DZJ1Tyrosine-protein kinase BAZ1B OS=Xenopus laevis OX=8355 GN=baz1b PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003199 (this species only) · gene tree & orthology
Ubiquitin familyE3|E3 activity RING|PHD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00628
all species →
PHDPHD-fingerDomainInterproscan
PF00439
all species →
BromodomainBromodomainDomainInterproscan
PF15613
all species →
WSDWilliams-Beuren syndrome DDT (WSD), D-TOX E motifFamilyInterproscan
PF10537
all species →
WAC_Acf1_DNA_bdATP-utilising chromatin assembly and remodelling N-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019787
all species →
DomainZinc finger, PHD-fingerInterproscan
IPR001965
all species →
DomainZinc finger, PHD-typeInterproscan
IPR013083
all species →
Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001487
all species →
DomainBromodomainInterproscan
IPR047256
all species →
DomainTyrosine-protein kinase BAZ1B, PHD fingerInterproscan
IPR028941
all species →
DomainWHIM2 domainInterproscan
IPR013136
all species →
DomainWSTF/Acf1/Cbp146Interproscan
IPR018501
all species →
DomainDDT domainInterproscan
IPR036427
all species →
Homologous_superfamilyBromodomain-like superfamilyInterproscan
IPR018359
all species →
Conserved_siteBromodomain, conserved siteInterproscan
IPR019786
all species →
Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR011011
all species →
Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR001841
all species →
DomainZinc finger, RING-typeInterproscan
IPR047174
all species →
FamilyTyrosine-protein kinase BAZ1BInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46802
all species →
TYROSINE-PROTEIN KINASE BAZ1BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0006338
all species →
Biological Processchromatin remodelingInterproscan
GO:0006974
all species →
Biological ProcessDNA damage responseInterproscan
GO:0035173
all species →
Molecular Functionhistone kinase activityInterproscan
GO:0042393
all species →
Molecular Functionhistone bindingInterproscan
GO:0090535
all species →
Cellular ComponentWICH complexInterproscan
GO:0140801
all species →
Molecular Functionhistone H2AXY142 kinase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSVBPP00000015862.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP