Gene detail

Detailed information of ENSVBPP00000016993.1 in Meandrina meandrites

Genomic Location: not available for this species
NR annotation: KAJ7393053.1, WD domain repeat-containing protein 55 [Desmophyllum pertusum]
Species abbreviation MMEAN · all data for this species · gene families

Sequence

CDS

Transcript

ENSVBPT00000017629

CATTATCGAGAGCTAACCCTAAACACCAGGCTACATTTTATGTAGGTTTTGGcgtagacttttaaaaccttggcgtatcttTGCCGTTGGATGtacacggaatgcaccctggccTAAACAGCTAACGTTaacactttgttttgtttgtaaagGGGACAGAAGATGATGTACCAGGTGATATCAGTTTTAACAGCCAGGTGTTTGATTTAAGCTTCCATCCAAATAGAGATGTTATTGCTGCTGGAGAAATTGATGGAAGGGTAACAGTTCACTCATACTCTGTTTCTCAAGAGAATCACATGTTGCTGGATCTTCACCATCACAAGAAAGCTTGCAGAGCATTGTCCTTCTCACCAGATGGCTTGTACCTTTTTACGGCATCTAAAGACAAGTCTCTACAGGCTGTTGACATGAATTCAGGAGCAGTCGCACATGCCATTTCAAAAGCACACAATTCCCCTGTTTACTGCATGAAGGTCATAACTGACAATCTTTTAACGACAGGTGACGACAATGGCTGTGTCAAGCTCTGGGACACAAGGCAAGCGGCTTGTGTATTGACGGTGGCTGATAATGAAGACTTTATTTCTGATATGGCCTGTGATGCGGAAAAAAAGACACTTCTAGCAACAAGTGGTGATGGTACGTTATCGGTATTTAACATTCGGCGTCAAAAGATTGAGCAGCGATCTGACAACATGGAAAGTGAGCTTCTCTCAGTTGCAGTTGTAAAGGGTGGCCGCAAGGTTGTCTGTGGCACTGGAGATGGTATTTTAAACCTGTTCTCTTGGAATGAGTGGGGTGACATAAGTGACCGCTTTCCAGGACACCCCTTATCCATTGATTCCTGTGTGGCTGTCAGTGAAAATGTTGTCTGTACAGGTTCAATGGACGGAATAATCAGAGCTGTGCATATTCTACCAAACCGTTTTGTTGGTACCGTTGGAGAACACGATGATTTTCCAGTGGAGAGAATGCGCCTATCACGAGATGGAGACACTCTGGCGAGTTGTTCGCACGATCAAAGCATCAAGTTTTGGGACGTGAGTCACCTCAAGACACTGCATGTGGATCCCGGAAGTAAAAAGAAGGACGCTGAGGCGGACAATACCACAAACGACTTCTTTGCTGATTTATAGCGTTCACAGCTTTCTGCAGTTATCATTTGGTGGGATGTCAGTACGAGGACGAGGAGttgttggtggtggtgggggtggTAGTGAAGCAGGGGACAGGAGGCAAGAGGATGGAACAGGAGGAGAagtaggaggaggaggaggaggaggaggaagatgCAGCGGCGGCGGTAGAGGTGGCGGGTACTGAAGATTTGCATTCTTGTCGATCAACTGTCATTTTTCCAGTCGGGCTGGGTGAAAGGGAGTATTCGGTGGAAGGACTAATACGATTTCTTTGAGGGCAGAGCATGCGAAGGATTGGTGTGCGGTACCACATTTTGTGAGAGTGCGGATCTCCTTTCTTAAAATCTCAAGTCTGAGTAATTCGATAGGCTTTGGTAAAACTATGTGATTGGGAAAGGAAAACTCCAAGAAAAATACAAGCATGGCGAGTGTGACTCGCTAGAGGAATGATAGCGAAACGGATGACGGCGGTTGTGGATCGTGATTCCACTTGACGTTTGAACATTTATGGCTTTTGTGGTCTATCAGGGCGTAGAGCACTGAAAAATGCGgcaataaactttttataagATGTTTTCGACTTGTATTCACACCTGAATGTTTGTTCATATGAGACACGTGATCAAATCTCGAATACATTTTGCATCTTCACTACTTTGTTAGGTCATTTGTTTATTTCTATATAACCGCTTACATAAATACTTGTCATTCAATTCTATTGCTATTCCACATCATATACAGTCCcgacattttatttctcgttgttttctttattgatgTTCTTTTTTAAACTACGTTATATTAAATCTGCATGTCGTGGGGGATCCTGTCTTAGTGCAAGAGTCCTCACAGCTGGGTAATTCATCCGTGCATGTATCAAGATCGATCTCTGAATGGATTGCAAAACTACATGTGTAATAACAAGTAGTGCATTTCGTAAAACAGTCATCTCCTTGTGGCTTCGGACTGGCGGTAATTAGTGGTAGAAGCATACTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1L112	WD repeat-containing protein 55 OS=Rattus norvegicus OX=10116 GN=Wdr55 PE=2 SV=1
Q9CX97	WD repeat-containing protein 55 OS=Mus musculus OX=10090 GN=Wdr55 PE=1 SV=2
Q9H6Y2	WD repeat-containing protein 55 OS=Homo sapiens OX=9606 GN=WDR55 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005287 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR050505 all species →	Family	WD repeat-containing protein WDR55/POC1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44019 all species →	WD REPEAT-CONTAINING PROTEIN 55	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24750	WDR55, JIP5; WD repeat-containing protein 55	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.