Gene detail

Detailed information of ENSVBPP00000017992.1 in Meandrina meandrites

Genomic Location: chr8:31241039...31253841
NR annotation: XP_020628927.1, uncharacterized protein LOC110066069 [Orbicella faveolata]
Species Meandrina meandrites · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSVBPT00000018761

ATGAATCCTTTGGTAACCAGCAATGACCAGGGGGTTGTTTACAAAGATGCAATTTTTCTTTCAACACACAAGTTTGTGGGAGGAGTAGAAACCCCAGGCATCCTTGTAGCCAAGAAGAGTCTGTTTGTTAACCCTGTTCCCTCTGGTTGTGGTGGAGGCTCCGTGTTCTTTGTGACAGAAAACTCTCACAGATACCTGAAAGAGATTGAGATGAGGGAAGAAGCTGGCACGCCTGCCATTGTAGGAGCTGTTCGAGCTGGACTTGTCTTTCAACTTAAACAGGAAGTCAGTTCAGCTGCCATTATGACCAGAGAGGAAGATTTATGTAGAAGAGCATTGGTGTCATGGAGCAGCAGCAGTAATCTTGTTCTTCTTGGGAACACGTCTGTCCCACGACTTCCCATCTTCTCCTTCCTCGTCAGGCACCCGATCGCTGGGGTGTTCTTACATCATAACTATGTGTGTGCCCTGCTTAATGATCTGTTTGGAATACAGGCTCGTGGAGGGTGTGCTTGTGCCGGTCCCTATGCACAGaaTCTTTTGGGAATAAATGAACAACTGGCAAAAGAGATTGAAGATCTTCTATTGGAAGATAGTCGTTTGGACAGGGTACATCTAAGACGGTACCAGGAGTATTCTGAACGAGAAATTTTAAGACCAGGTTTTGTCCGTCTTAATTTGCCGTATTTCATGTCACACGATGCCgttgagtttgttttgaaagctgTTGAGATGGTGGCAGAACATGGCTGGAAGCTGCTTCCACAGTATATGTTTAATCCAGAGACTGGAGAATGGAAACACAGAAGGCATCAGGTGTTTCGAGACCGAAAGTGGCTTGGTTCCATCTCATATGCAGAGGGTCACATGACGTACCCATCACCCTTTCCGATCGCAGAGGAAACCCCAAGTTCCTacacgGAGTGTCTCTCTAAAGCTGAGGAAATATTTCTTAAAGCAAGTGCAAACAGGATTATTAACAGTGTTGGTGATCAGTCGTTATTGTTGGGCGAAGAAGGTGAAAAATCCCGCTGGTTTTTACTGCCCAGCGAAGCGGCGCAGCTGCTTAGTGGAAAAAATCCCGCGCATTTTCCTATGACGGTGCCGTTTACTCCACCACAATGGACGACTGACACGAGTGTCTTGGAGGGAACTAATTATGGTTGCTTGAAACCTTGTGATAGGACTTGTATAAGCACCGAAGAAAAATGCTCCTCGAAATTGATAGACAATTCTGCAATCTCCAGGGAAAATGACAACGATTTGTTTGTGAACTCTAGTTCTGTTGCTAGTGGCACAAATAGTGGCGATGTTTCTTTTAATAGTCAAAAGTGCGAGAACTATGAAGATAGAGATTTATCTACATTTCAACGCCCGGGTACGGCTAAAGTTGTAAATTCGGTGACAAACAGCGATGCTAAATCTCTCGAGGCTGTCAAATGCAGTCCTGCAAAATTCGACGCTGAAAATATGGATACCAGATATTTAGAGAATGGTGCTTGCGTGGAAAGGAATTTAGAAACATCGACAACAAAAGCTGATTCTTACGACTTAACCAACGAggaaaaattgttcaaaaatgaCGTTATGATAGATGGTGACTCTTTATCAAGCGAATTTGACACGGGACCTTCATCTACATTGGACAACGAGGCGGCGAAGATAGCATCAAATTCAACGGGCTCGATGAGTTTAATCACAAATGCTTCATCTGAAAACAAAGTAATTTCCGAAAACAGCGATGATATTGCAGATTCACAAACCGTCTGTCGAAGGAAACCGAGAAAGAACAAGCAAAATGAAGTGGCTAGTGGTAAACCACAGTTTCATCACCCGCCAAAGAACATTTTCAAACCAACTGTAGAGGCTTTAGAAGAGTACGATATGATTCGTGATGGCGATCGAGTGATGGTCTGTCTTTCCGGAGGCAAGGACTCGCTGTCTTTGCTACACACATTACATCAGTATCAATACTACAGCAAGTCTAAGGGTATTTGTTTTGAGCTTGGAGCGGCCACTGTGGACCCTCAATCACCAGGATATGACCCTAAGCCTCTGGTCCACTATTTAGCGGCCCTTGGTGTTCCTTACTACTTTGAAGAGCAGGGCATCATTCAACAGGCCGCCCAACTTACTGTTTGTGAGTCCATATGCAGTTTTTGTTCACGAATGAAGCGGGGCCGATTGTACGCATGCGCCAGGCGAGAAGGCTACAACGTGTTAGCTATGGGGCAACACTTAGATGACTTGGCCGAGAGCTTTTTGATGTCAGCATTCCACAATGGTCTCTTGCGAACAATGAAGGCGAACTACACAGTCTTGGAAGAGGACTTGCGAGTTATCAGACCTTTAGTTTACGTTCGTGAGAAGGAACTGCGAAAGTTTGCTGAGAAGGTAAAATTACCAGTGATTGCGGAGAATTGTCCGGCTTGTTTTGAGGCACCCAAGGAACGCCATAGAACAAAGCAGTTGTTGGCAGCTCAGGAAATATTGTTCCCAGGCCTCTATCACAGCCTGCTCACGGCCATGAAGCCACTGATGGCTCGCGACCGAGTGGGCCTGGAGTCCAGCAAAATGAAAGAAGGAAACTATGAGGACTTCCTGTGA

Transcript

ENSVBPT00000018761

GGACCTTATGTGGATATCAACATGAATCCTTTGGTAACCAGCAATGACCAGGGGGTTGTTTACAAAGATGCAATTTTTCTTTCAACACACAAGTTTGTGGGAGGAGTAGAAACCCCAGGCATCCTTGTAGCCAAGAAGAGTCTGTTTGTTAACCCTGTTCCCTCTGGTTGTGGTGGAGGCTCCGTGTTCTTTGTGACAGAAAACTCTCACAGATACCTGAAAGAGATTGAGATGAGGGAAGAAGCTGGCACGCCTGCCATTGTAGGAGCTGTTCGAGCTGGACTTGTCTTTCAACTTAAACAGGAAGTCAGTTCAGCTGCCATTATGACCAGAGAGGAAGATTTATGTAGAAGAGCATTGGTGTCATGGAGCAGCAGCAGTAATCTTGTTCTTCTTGGGAACACGTCTGTCCCACGACTTCCCATCTTCTCCTTCCTCGTCAGGCACCCGATCGCTGGGGTGTTCTTACATCATAACTATGTGTGTGCCCTGCTTAATGATCTGTTTGGAATACAGGCTCGTGGAGGGTGTGCTTGTGCCGGTCCCTATGCACAGaaTCTTTTGGGAATAAATGAACAACTGGCAAAAGAGATTGAAGATCTTCTATTGGAAGATAGTCGTTTGGACAGGGTACATCTAAGACGGTACCAGGAGTATTCTGAACGAGAAATTTTAAGACCAGGTTTTGTCCGTCTTAATTTGCCGTATTTCATGTCACACGATGCCgttgagtttgttttgaaagctgTTGAGATGGTGGCAGAACATGGCTGGAAGCTGCTTCCACAGTATATGTTTAATCCAGAGACTGGAGAATGGAAACACAGAAGGCATCAGGTGTTTCGAGACCGAAAGTGGCTTGGTTCCATCTCATATGCAGAGGGTCACATGACGTACCCATCACCCTTTCCGATCGCAGAGGAAACCCCAAGTTCCTacacgGAGTGTCTCTCTAAAGCTGAGGAAATATTTCTTAAAGCAAGTGCAAACAGGATTATTAACAGTGTTGGTGATCAGTCGTTATTGTTGGGCGAAGAAGGTGAAAAATCCCGCTGGTTTTTACTGCCCAGCGAAGCGGCGCAGCTGCTTAGTGGAAAAAATCCCGCGCATTTTCCTATGACGGTGCCGTTTACTCCACCACAATGGACGACTGACACGAGTGTCTTGGAGGGAACTAATTATGGTTGCTTGAAACCTTGTGATAGGACTTGTATAAGCACCGAAGAAAAATGCTCCTCGAAATTGATAGACAATTCTGCAATCTCCAGGGAAAATGACAACGATTTGTTTGTGAACTCTAGTTCTGTTGCTAGTGGCACAAATAGTGGCGATGTTTCTTTTAATAGTCAAAAGTGCGAGAACTATGAAGATAGAGATTTATCTACATTTCAACGCCCGGGTACGGCTAAAGTTGTAAATTCGGTGACAAACAGCGATGCTAAATCTCTCGAGGCTGTCAAATGCAGTCCTGCAAAATTCGACGCTGAAAATATGGATACCAGATATTTAGAGAATGGTGCTTGCGTGGAAAGGAATTTAGAAACATCGACAACAAAAGCTGATTCTTACGACTTAACCAACGAggaaaaattgttcaaaaatgaCGTTATGATAGATGGTGACTCTTTATCAAGCGAATTTGACACGGGACCTTCATCTACATTGGACAACGAGGCGGCGAAGATAGCATCAAATTCAACGGGCTCGATGAGTTTAATCACAAATGCTTCATCTGAAAACAAAGTAATTTCCGAAAACAGCGATGATATTGCAGATTCACAAACCGTCTGTCGAAGGAAACCGAGAAAGAACAAGCAAAATGAAGTGGCTAGTGGTAAACCACAGTTTCATCACCCGCCAAAGAACATTTTCAAACCAACTGTAGAGGCTTTAGAAGAGTACGATATGATTCGTGATGGCGATCGAGTGATGGTCTGTCTTTCCGGAGGCAAGGACTCGCTGTCTTTGCTACACACATTACATCAGTATCAATACTACAGCAAGTCTAAGGGTATTTGTTTTGAGCTTGGAGCGGCCACTGTGGACCCTCAATCACCAGGATATGACCCTAAGCCTCTGGTCCACTATTTAGCGGCCCTTGGTGTTCCTTACTACTTTGAAGAGCAGGGCATCATTCAACAGGCCGCCCAACTTACTGTTTGTGAGTCCATATGCAGTTTTTGTTCACGAATGAAGCGGGGCCGATTGTACGCATGCGCCAGGCGAGAAGGCTACAACGTGTTAGCTATGGGGCAACACTTAGATGACTTGGCCGAGAGCTTTTTGATGTCAGCATTCCACAATGGTCTCTTGCGAACAATGAAGGCGAACTACACAGTCTTGGAAGAGGACTTGCGAGTTATCAGACCTTTAGTTTACGTTCGTGAGAAGGAACTGCGAAAGTTTGCTGAGAAGGTAAAATTACCAGTGATTGCGGAGAATTGTCCGGCTTGTTTTGAGGCACCCAAGGAACGCCATAGAACAAAGCAGTTGTTGGCAGCTCAGGAAATATTGTTCCCAGGCCTCTATCACAGCCTGCTCACGGCCATGAAGCCACTGATGGCTCGCGACCGAGTGGGCCTGGAGTCCAGCAAAATGAAAGAAGGAAACTATGAGGACTTCCTGTGACGAGAAGAATGGGGCGAGTGCCAAGGAAAATTACTACAGGAAGTACAGAAATGCGGGATGCCGTTAACTATAGCCTCTAACCGCATATAAACCAGTTTTGACGAACAAGATCAACTTCATGTTGTAAGATCAACTTGTCTGACAATGCTTAGAGGAAATGGTCACGGGAGTGTTTGAGATTACACGCAGCGTAACACACTCGCGATCTCGCGTGGAAGTACTAGTTGATACGCGAACCAGAAATGAATGGCAAAGTGTATAGAGATTTGTACAACACTGGACACAACCATTTCAGCTTTATTTTGGACTGCAACCTCTCTTCAGATATGGATCGCCGTGCGAGAAGCGTGGAACGTGCGAGGATAAAACATAGCCCCATGGACAAGAAGCGAACAACGCCTCTCTTCCGCGACGTCCGCGCGGCGCGGCTGCGTTTTATTCTCGCTTCTCCCTCGACGTTCCACATACAAATCCAGGAGCTTTTTGCAGTCTATGTTTATTTCAAGAATGAATCCAAAATTactatttacaattaaaaaGTATGAAATATGTCAGCTATACTTAGCatttaatttggcaaataaATGAAACATTACATCTGTCGCacaaaagaattaaaaatactcGTTTGCCTCAAAGCCTGTCGCACTGGTTTACCGGACAACAAAAGGTACTTTGCATGTTATTTATGTACAATAAAATACTTTAAATTCGTGCTGTATGTTCAGTTCAAATAAGCCGCATTGGTTGCGCATCTCCTCACCTGTGAGGTGAAAGGAGTTCTGTACACCCTTTAGCTAATGAGATTGTCATGTTGAAAAACAGTTTTGTTGTAATAATAATGCTGCGTAGTTTTCTTTACTAACctttaagagcacaaaagccAGGGGGAGGCGATAAAAACACCATTCACTCACAAAACTATCGTGTTAGAGCGATAACTAAACCCAATCAATTGACAGAGCTATAAATATCTAGGTTAACCAattaaaattgaga

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q74GW7	tRNA-cytidine(32) 2-sulfurtransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=ttcA PE=3 SV=2
B6ELU0	tRNA-cytidine(32) 2-sulfurtransferase OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 GN=ttcA PE=3 SV=1
Q5E590	tRNA-cytidine(32) 2-sulfurtransferase OS=Aliivibrio fischeri (strain ATCC 700601 / ES114) OX=312309 GN=ttcA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001161 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01171 all species →	ATP_bind_3	PP-loop family	Family	Interproscan
PF00266 all species →	Aminotran_5	Aminotransferase class-V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011063 all species →	Domain	tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR000192 all species →	Domain	Aminotransferase class V domain	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43686 all species →	SULFURTRANSFERASE-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for ENSVBPP00000017992.1 in Meandrina meandrites.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSVBPP00000017992.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →