Gene detail

Detailed information of ENSVBPP00000020554.1 in Meandrina meandrites

Genomic Location: :...
NR annotation: CAH3038864.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSVBPT00000021446

ATGGATATAAAGACCTTGTTAAACAATCTTCACGACAAAGTAACCTGTTCCGTGTGCATGAACACATATACTAATCCCAaacagctgccatgtttacacagtttttgCCTTCACTGCCTAAACGAGATTCTGCGAACGGCTGGCCGCCGCGGTATGATAATATGTCCAGAATGCCGAACATCGGTTCGAGTCACAAGAAGCGGAGACCTTAGCGAGCTTCCTACCAACTTTCACATCAACAATTTGCTAGATGTGTTGGCCATTAAAGAGTGCACCACTTCTGCTGTGAAATGTGAAAATTGTGACAAAAGAAGCTCCCAGTGTCTGTACTGTTTCCAGTGTTATACGTTCTGGTGTGACGATTGCATTACTACACACAACTTAATCCGAGCGAATAAAGAGCATCGAGTGTTGGCGCTTAGGGAATTTCAAGATCAAGACATGGAAAAAGTTTTAAAGCGCCCGGCATTTTGCCAAAAGAAACATCACGAACGAGAAGAGTTGAAGTTCTTTTGTGAAGACTGTAAAGTTCCTGTTTGTAACATTTGTGTCGTGACACTTCACGAGGGTCACTCCAAGATACTTCTGAAAGAAtcagaaaatgaaagaaagttACAAGGATTAAGAATAGAAGATTATGAAGCTGGACGTAAAACTGGAGCTGCTGTCTCAACTGGTTTGTCTACAAACACAAGACCTGAAGGTCTGTTTGGAAATATCTCCGCAACAGGATCTGAGGCTTTATCTTCATCAATTGGACAAAAAGCTCAGTGTACCACTGGTGCGTTATCGGGTACCGCAGGCCCTGGGACACCTGTCAAGTTCTGTgtTGTTCAAGGAACTGATTCTATGGTTAAGAATGGCATCACAACCAATATCAGCGTCAGACATCAGTGCATCACTGTCATGTCAAATTATGAGAAGAAAAGTATAGAGGAGTTAAGAATAGAAGATTATGAAGCTGGCCGTAAAACTGGAGCTGCTGTCTCAACTGGTTTGTCTACAAACACAACAACTGGCGGTCTGTTTGAAAATATCTCCGCAACAGGATCTGAGGCTTCATCAACATTAATTGGACAAAAAGCTGGAGCCCAGTGTACTATTGGCGCGTTATCGAGTACCACAGGCCCTGGGACACCTGTAAAGTTTAGTgtTATTCAAGGAACTGATTCTATGGTTAAGAATGGCATTACCACCAATATCAGCGTCAGATATCAGTGCATCACTGTCATGACAAATTATGAGGAGAAAAGTATAGAGgAGTTAAGAATAGAAGATTACGAAGCTGGACGAAAAACTGGAGCTGCTGGCTCAACTGGTTTGTCTACAAACACAAGAACTGGAGGTCTGGCTCGAAATATATCTGCAACAGCATCTGAGACTTCATCTTCATTAACTGGGCAAAATGCTGGAGCCCAGTGTACTATTGGCGAGTTATCGAGTACCACAGGCCCTGGGACACCTGTCAAGTTTAGTGTTGTTGAAGGAACTGATTCTATGGTTAAGAATGGCATCACAACCAACATCAACGTCAGACATCAGTGCATCACTGTCATGACAAATTATGAGAAGAAAAGTATAGAGGAATTAAGAATAGAAGATTATGAAGCTGGACGTAGAACTGGAACTGCTGTCTCAACTGGTTTGTCTACAAGCCCAAGAACTGGAGGTCTGTTTGAAAATATCTCCGCAACAGGATCTGAGGCTTCATCTTCATTAATTGGACAAAAAGCTGGAGCCCAGTATACTATGCGCGCGTTATCGGGTACCACACCTGTCAAGTTTAGTgtTGTTCAAGGAACTGATTCTATGGTTAAGAATGGTATTACCACCAATATCAACGTCAGACATCAGTGCATTACTGTCATGGCAAATTATGAGAAGAAGAGTATAGAGGAACTGAGAATAGAAGATTATGAAGCTGGACGTAAAACTGGAGCTGCTGACTCAACTGGTTTGTCTACAAACACAAGAACTGAACTATTTGAAGATATACCTGTCATGTTTCAAgatttgacacttaaataa

Transcript

ENSVBPT00000021446

GTTTTCAACTCCAAATCTTGTTGATTTCCGCGTTTAATCATGGATATAAAGACCTTGTTAAACAATCTTCACGACAAAGTAACCTGTTCCGTGTGCATGAACACATATACTAATCCCAaacagctgccatgtttacacagtttttgCCTTCACTGCCTAAACGAGATTCTGCGAACGGCTGGCCGCCGCGGTATGATAATATGTCCAGAATGCCGAACATCGGTTCGAGTCACAAGAAGCGGAGACCTTAGCGAGCTTCCTACCAACTTTCACATCAACAATTTGCTAGATGTGTTGGCCATTAAAGAGTGCACCACTTCTGCTGTGAAATGTGAAAATTGTGACAAAAGAAGCTCCCAGTGTCTGTACTGTTTCCAGTGTTATACGTTCTGGTGTGACGATTGCATTACTACACACAACTTAATCCGAGCGAATAAAGAGCATCGAGTGTTGGCGCTTAGGGAATTTCAAGATCAAGACATGGAAAAAGTTTTAAAGCGCCCGGCATTTTGCCAAAAGAAACATCACGAACGAGAAGAGTTGAAGTTCTTTTGTGAAGACTGTAAAGTTCCTGTTTGTAACATTTGTGTCGTGACACTTCACGAGGGTCACTCCAAGATACTTCTGAAAGAAtcagaaaatgaaagaaagttACAAGGATTAAGAATAGAAGATTATGAAGCTGGACGTAAAACTGGAGCTGCTGTCTCAACTGGTTTGTCTACAAACACAAGACCTGAAGGTCTGTTTGGAAATATCTCCGCAACAGGATCTGAGGCTTTATCTTCATCAATTGGACAAAAAGCTCAGTGTACCACTGGTGCGTTATCGGGTACCGCAGGCCCTGGGACACCTGTCAAGTTCTGTgtTGTTCAAGGAACTGATTCTATGGTTAAGAATGGCATCACAACCAATATCAGCGTCAGACATCAGTGCATCACTGTCATGTCAAATTATGAGAAGAAAAGTATAGAGGAGTTAAGAATAGAAGATTATGAAGCTGGCCGTAAAACTGGAGCTGCTGTCTCAACTGGTTTGTCTACAAACACAACAACTGGCGGTCTGTTTGAAAATATCTCCGCAACAGGATCTGAGGCTTCATCAACATTAATTGGACAAAAAGCTGGAGCCCAGTGTACTATTGGCGCGTTATCGAGTACCACAGGCCCTGGGACACCTGTAAAGTTTAGTgtTATTCAAGGAACTGATTCTATGGTTAAGAATGGCATTACCACCAATATCAGCGTCAGATATCAGTGCATCACTGTCATGACAAATTATGAGGAGAAAAGTATAGAGgAGTTAAGAATAGAAGATTACGAAGCTGGACGAAAAACTGGAGCTGCTGGCTCAACTGGTTTGTCTACAAACACAAGAACTGGAGGTCTGGCTCGAAATATATCTGCAACAGCATCTGAGACTTCATCTTCATTAACTGGGCAAAATGCTGGAGCCCAGTGTACTATTGGCGAGTTATCGAGTACCACAGGCCCTGGGACACCTGTCAAGTTTAGTGTTGTTGAAGGAACTGATTCTATGGTTAAGAATGGCATCACAACCAACATCAACGTCAGACATCAGTGCATCACTGTCATGACAAATTATGAGAAGAAAAGTATAGAGGAATTAAGAATAGAAGATTATGAAGCTGGACGTAGAACTGGAACTGCTGTCTCAACTGGTTTGTCTACAAGCCCAAGAACTGGAGGTCTGTTTGAAAATATCTCCGCAACAGGATCTGAGGCTTCATCTTCATTAATTGGACAAAAAGCTGGAGCCCAGTATACTATGCGCGCGTTATCGGGTACCACACCTGTCAAGTTTAGTgtTGTTCAAGGAACTGATTCTATGGTTAAGAATGGTATTACCACCAATATCAACGTCAGACATCAGTGCATTACTGTCATGGCAAATTATGAGAAGAAGAGTATAGAGGAACTGAGAATAGAAGATTATGAAGCTGGACGTAAAACTGGAGCTGCTGACTCAACTGGTTTGTCTACAAACACAAGAACTGAACTATTTGAAGATATACCTGTCATGTTTCAAgatttgacacttaaataatcAACATAAATTGTACAAAACTCTATTCAGGGTCATCATATTTCACgatcaatttttttaatttccgaTCTTGCCTCTGCTTTTCAGTTTTCGCCGACATTTCTTTGTCTTGTTTAAGTATGAATATGTTCCACCGACCTTTTTTCAACTTTATTCCAACTTATCCGGCGTCCACGATTTCCTAACATTTTCCCCGAATTTCTCCTCCACTGTTTTTTGTTAAAGTACATCCTAGTACGTTTTTCTCAACAAGTCTTAAAAATGACAAGTTTAATTTGCTCATGTACAACGAACTAAAGGTCGGCACGCACTAGAGGACTGATCCCTGTGACTGGTCACGGGGACCAAATACCCCCGCGTGTGAATTAcccattttcataaaaaaattcTAGTCGCAGTGATCAAATGTTGGCCCCTGCGACTAGCCCCACAAATCCAATTTGTGGGACTAGTCACAGGGACTAGTCCCATGGAATTTTGCTTGTCACCTCATATGTACTGTTTGTGCAACTAGTCGCGGTGACCAAactaaaaaaatcaaccaatcggAAACCTAAGTGGTCGGCCACTGAGACTACTCCtactattttttgttttaacttttacTTTTAGGGAAACAAGGGTTACGTCAGAAGTTCTGCTcgatttaaataataaaaaaatacctTATTGGGCCGATACCAAAATGATACCAAAATGTCCGACGTCAAGTTGAATAGCTGTAGATTTCAACCATTTGATGTATATAGAACACGAGAAGAGGAAAATTCAAAAGTGCAAAATTAAAAGTAACACCATCTATGGAGACAGAGAGCATTTTCTGAGGCCCCGCCGAGACTATGGAACACGATCCCACTCGAAATAAGCTAAACtggatttttaactttttcgattcttttataatttttataattttaaatattttccttCATCGTTtcgatatttttattgtaaagcGCCATGGGCAATTAGTGGATTTGGCGCTATTATTAATGTTAT

Protein

Uniprot

Gene family

Uniprot term	Description
Q56R14	E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis OX=8355 GN=trim33 PE=1 SV=1
P49793	Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus OX=10116 GN=Nup98 PE=1 SV=2
P52948	Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens OX=9606 GN=NUP98 PE=1 SV=4

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF21240	Nup98_GLEBS	Nup98, Gle2-binding sequence	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR037665	Family	Nucleoporin peptidase S59-like	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23198	NUCLEOPORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000973	Biological Process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0034398	Biological Process	telomere tethering at nuclear periphery	Interproscan
GO:0044614	Cellular Component	nuclear pore cytoplasmic filaments	Interproscan