Genomic Location: chr2:4836800...4844911
NR annotation: PFX15407.1, histone H3, embryonic [Stylophora pistillata]
Species Meandrina meandrites · all data for this species · gene families
| CDS |
| ENSVBPT00000023839 |
| Transcript |
| ENSVBPT00000023839 |
| Protein |
| ENSVBPP00000022876.1 |
| UniProt accession | Description |
|---|---|
| Q803H4 | Histone H3-like centromeric protein A OS=Danio rerio OX=7955 GN=cenpa PE=1 SV=1 |
| Q7RXR3 | Histone H3-like centromeric protein hH3v OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=hH3v PE=3 SV=1 |
| Q569M3 | Histone H3-like centromeric protein A OS=Xenopus laevis OX=8355 GN=cenpa PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000363 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00125 all species → | Histone | Core histone H2A/H2B/H3/H4 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000164 all species → | Family | Histone H3/CENP-A | Interproscan |
| IPR009072 all species → | Homologous_superfamily | Histone-fold | Interproscan |
| IPR007125 all species → | Domain | Histone H2A/H2B/H3 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45810 all species → | HISTONE H3.2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000786 all species → | Cellular Component | nucleosome | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0030527 all species → | Molecular Function | structural constituent of chromatin | Interproscan |
| GO:0046982 all species → | Molecular Function | protein heterodimerization activity | Interproscan |
ENSVBPP00000022876.1.Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |