Gene detail

Detailed information of ENSVBPP00000025145.1 in Meandrina meandrites

Genomic Location: :...
NR annotation: CAH3033611.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSVBPT00000026213

tgttaCGGTGTCAGTCAATTTTAGACCTATATTGGATCTTATAATCGTTGTTAATGGTTTTATGTTTTTGTGCAATTTTTAGGAGGCCTTAAGATCGGTCTCCGATGCAGATCAGGCCAAAAATGCTCTTTCTTTGATGCAAGTTTATGTCAACAACATAGTGAAAGATCCAGTGAATCCGAAATACAGAAAAATCCGAATAAGTAATCCAAAGTTCAATGCAGTGATCTGGCAGCTGGAACAAGCAAGgacatttttgttgttttcaggcTTTGAGCAGGAAGGGGAATTTTTGGTTCTTCCTTCTTCAATCAAACTAGATGGAGCCAAACTGTTGATTGATGAAGCTCTCGGCATTTCACCATCAAACCAAACAAGCCATGCTAGTACCAGTGCCCCTTCAAATACAAGTCAACCAGGCAGTGTGCTCAAGCTTAATACACAAAAAGACTCTAGCTTGTTTGATCAAGATGCAAAGGCAGATCTCACACTGCTCTCCTACATGAAAGAAATGGGTTATGATATTGTTGTGGCAGAGAATGCATTAATTGCCACTAAAAACAAAGGGATTCAGCCTGCTATTGATTGGATAAACCAGAATCCTGATAAAGCAATGTTACAACAATCAGGAACCAATGTGACAGCTGATCCACTGTGTGACAACACACAGGGTATCAGTCAGCACTCACTTGCTAGCAGCTCATCATCTGCCCCTGCACCAGTACAGTCCAGATACCAAAAGACATTAGATGAGAGGCACAAGTTTCAAGAAAGACTCAGGCTGGAAGCAATTGAGGAGGCAAAGTTGGAAAAGCAAAGGAAGAAACTTCATAAGGAAAACTTGTTGAAAGACATGAAGGATGAAAAAGATGAAAAATTAGAAAAGGCAAAATATGCAAAACTAACAGAGAACACAGCTGAGCCTTCAAACAAGGCTATTAGTGACCAGCAGTGTGGTGATGGCGAGTCATCAATGGTGGAATTGAGAATAAGAATGCCGGATGGACAGGTTTTATCTCTTAGTCTTTCCAGCAACTCATCAATTGAAACATTATACGAggAAGTTAAAAGTCAGTGGCCTTCAAATGACAGCCAAAGCGTGGATGACTTTGTCCTCATGACATCGTTTCCACAACGACAAATCTCTGATATGGAAAGCACCTTAGAAGCAGCAGGTTTGGCCCCGCGTGCAGCACTTGTGGTGCAGAGGACAGATCAACAAGGTGTGCTTACCCAGGGGGAGGGGGCAGtatATAGCGTAAGAAATGTTGCGAAAATGGACGATTGGCAGGAATTATTGAGTGAGCGAGACAAACTTATTGTAGTTCAGTTTCACGCTCCTTGGTGTTCGTTGTGCCGGTCAGTGTCAGACTCGTACGATTCCATGAATGCCAGTTATGGAATGAACGGACAAGTTTTGTTTGTACGTGTTAACGTCGACGAGTTCAAGGTGTTAAAGTACCAGCAAAGAGTCACGTCACTGCCCACATTTAAACTCTTTTGGAATGACCAGGCGATAGCTCACGCGGAAGGAACTAACATGGAGGACTTGAAGCAACAAATTGAGGCAAACATAAATGGACCAAAGGAGAACCCGCCGGAAGACTCATCAATGAATGATGATATGTACCATGACCCGAGATAATGCGGGACCTGTTCTTGGAACAAATACTGAGTTGATAAAGACGATATTACTTCCCGAGAAAATGAGCCTTGAGCATGTTTCTCAATTATGCCTGAGGCACTTTGTGTTGTCACTCGGAGGTTGGCAAATGACTTAAAGGCTTACACTATGGAGAGTAAGACAATGCTTGCGTGGCTATTAGAAGAAGTCAGAATGAAATTGAACAATAGAAGATAGCCGGAGAGCAATGTTAAGCTAATCGAAATATCGATAAAATATGGGTTTTTGTCTCTGTTTCAAAATGATTTCTGCTGCAAAACCATTTATACCCGAGCCCGTCGTTTTCCGTTAGCGGCGTAACTAAGTAACATGGCGTAATCTGTGATGTCATTGGTGAAATAATTGCTGAATACTGGCCGGAAGTATTCGCTTAAATTTCGAATCGCCATACTCTTCGGGTTCTCTGACGACAAACTTTAATCAAAGGGAAGCTCTCTACCCCGATAGATACAGGCTTATGCCCAGAAAACGTTCCATATTTTTTAACCATGTTGCTTTATAATGTTGTGTTGATACTAGAAGACATTGCCATTTTGTTTCGTCTTGCcgcatcgttttttttttatattttaaatgtGCGTTTAAAACTTTTAGCCATGCATCTTTCTGTTGGTATTCCAATCTCCTCTGTGAATCAAACAGTTCACAGTCTCACGTGCAATTCATCAGATCGCGTCCACAATGCCTGCGTTGCCTCCTGCACTAACTAATTTTGTTGACCAGACATTGGAACACCAATACAAAGATAAACGCCTTGTGTAAATCCACTGCTAATTTTGACAATGTTGTCAAGAGAAAGCGAGTTGAAAATTTGGAAAATGTAACTTCCAAATTTACCATATTAATGAATCCCGGCAACACTTTATAATCTAAAAGTTTGTCTGAAACTTTTCAAACCTCTCATGGTAAAACgattgaataaaattaaaaacttgtGTCAAACTGGATTCGCCGAGTTta

Protein

Uniprot

Gene family

Uniprot term	Description
O22263	Protein disulfide-isomerase like 2-1 OS=Arabidopsis thaliana OX=3702 GN=PDIL2-1 PE=2 SV=1
Q5XHX6	Thioredoxin domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Txndc2 PE=1 SV=2
P37395	Thioredoxin OS=Cyanidium caldarium OX=2771 GN=trxA PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD\|UBX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09409	PUB	PUB domain	Domain	Interproscan
PF00789	UBX	UBX domain	Domain	Interproscan
PF00085	Thioredoxin	Thioredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001012	Domain	UBX domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR018997	Domain	PUB domain	Interproscan
IPR013766	Domain	Thioredoxin domain	Interproscan
IPR036339	Homologous_superfamily	PUB-like domain superfamily	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46340	UBX DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0031397	Biological Process	negative regulation of protein ubiquitination	Interproscan
GO:0032435	Biological Process	negative regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0036435	Molecular Function	K48-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:1903094	Biological Process	negative regulation of protein K48-linked deubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan