Detailed information of ENSVBPP00000027642.1 in Meandrina meandrites

Genomic Location: chr2:26213585...26283920
NR annotation: XP_020629671.1, G-protein coupled receptor 98-like isoform X1 [Orbicella faveolata]
Species Meandrina meandrites · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6JAN0Adhesion G-protein coupled receptor V1 OS=Danio rerio OX=7955 GN=adgrv1 PE=2 SV=1
Q8VHN7Adhesion G-protein coupled receptor V1 OS=Mus musculus OX=10090 GN=Adgrv1 PE=1 SV=1
Q8WXG9Adhesion G-protein coupled receptor V1 OS=Homo sapiens OX=9606 GN=ADGRV1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001860 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03736
all species →
EPTPEPTP domainRepeatInterproscan
PF13385
all species →
Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF00002
all species →
7tm_27 transmembrane receptor (Secretin family)FamilyInterproscan
PF03160
all species →
Calx-betaCalx-beta domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR038081
all species →
Homologous_superfamilyCalX-like domain superfamilyInterproscan
IPR009039
all species →
RepeatEARInterproscan
IPR005492
all species →
RepeatLeucine-rich glioma-inactivated , EPTP repeatInterproscan
IPR003644
all species →
DomainNa-Ca exchanger/integrin-beta4Interproscan
IPR006558
all species →
DomainLamG-like jellyroll foldInterproscan
IPR017981
all species →
DomainGPCR, family 2-like, 7TMInterproscan
IPR000832
all species →
FamilyGPCR, family 2, secretin-likeInterproscan
IPR026919
all species →
FamilyAdhesion G-protein coupled receptor V1Interproscan
IPR013320
all species →
Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46682
all species →
ADHESION G-PROTEIN COUPLED RECEPTOR V1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007154
all species →
Biological Processcell communicationInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0004888
all species →
Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0007166
all species →
Biological Processcell surface receptor signaling pathwayInterproscan
GO:0004930
all species →
Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186
all species →
Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0001965
all species →
Molecular FunctionG-protein alpha-subunit bindingInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0007194
all species →
Biological Processnegative regulation of adenylate cyclase activityInterproscan
GO:0010855
all species →
Molecular Functionadenylate cyclase inhibitor activityInterproscan
GO:0071277
all species →
Biological Processcellular response to calcium ionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSVBPP00000027642.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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