Genomic Location: chr5:40071721...40086763
NR annotation: RMX42738.1, hypothetical protein pdam_00014155 [Pocillopora damicornis]
Species Meandrina meandrites · all data for this species · gene families
| CDS |
| ENSVBPT00000029823 |
| Transcript |
| ENSVBPT00000029823 |
| Protein |
| ENSVBPP00000028613.1 |
| UniProt accession | Description |
|---|---|
| P41541 | General vesicular transport factor p115 OS=Bos taurus OX=9913 GN=USO1 PE=1 SV=1 |
| O60763 | General vesicular transport factor p115 OS=Homo sapiens OX=9606 GN=USO1 PE=1 SV=2 |
| P41542 | General vesicular transport factor p115 OS=Rattus norvegicus OX=10116 GN=Uso1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004617 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18770 all species → | Arm_vescicular | Armadillo tether-repeat of vescicular transport factor | Repeat | Interproscan |
| PF04869 all species → | Uso1_p115_head | Uso1 / p115 like vesicle tethering protein, head region | Repeat | Interproscan |
| PF04871 all species → | Uso1_p115_C | Uso1 / p115 like vesicle tethering protein, C terminal region | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR041209 all species → | Repeat | Vesicle tethering protein p115, armadillo tether-repeat | Interproscan |
| IPR006953 all species → | Domain | Vesicle tethering protein Uso1/P115-like, head domain | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR006955 all species → | Domain | Uso1/p115-like vesicle tethering protein, C-terminal | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10013 all species → | GENERAL VESICULAR TRANSPORT FACTOR P115 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005783 all species → | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0005795 all species → | Cellular Component | Golgi stack | Interproscan |
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0006888 all species → | Biological Process | endoplasmic reticulum to Golgi vesicle-mediated transport | Interproscan |
| GO:0012507 all species → | Cellular Component | ER to Golgi transport vesicle membrane | Interproscan |
| GO:0045056 all species → | Biological Process | transcytosis | Interproscan |
| GO:0048211 all species → | Biological Process | Golgi vesicle docking | Interproscan |
| GO:0061025 all species → | Biological Process | membrane fusion | Interproscan |
| GO:0000139 all species → | Cellular Component | Golgi membrane | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0048280 all species → | Biological Process | vesicle fusion with Golgi apparatus | Interproscan |
| GO:0016192 all species → | Biological Process | vesicle-mediated transport | Interproscan |
ENSVBPP00000028613.1.Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
