Gene detail

Detailed information of ENSVBPP00000029422.1 in Meandrina meandrites

Genomic Location: chr3:23252282...23265173
NR annotation: XP_020623748.1, fibroblast growth factor receptor 3-like isoform X1 [Orbicella faveolata]
Species Meandrina meandrites · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSVBPT00000030642

AAAGACGTCGACTGAGCTGTTCGTGACAAGAGCGGAATCCGGGAATATCACAAAAACAGGAAACCAATTCTGGCACGATCTGACGATGATCGTTCTTTTCTTGTCGAAAGCGTTATTTGCCTTCCTGGTCGTTCTGCCATTCGGCGAAGTAAGGCCATGCTCAGTTCCTGATATCCGAGAAAAGCGTGGAAACGAGAAAAAGGTTGTCGAAGTCATCGCAGGAAAAGACGTAAAACTCGTTTGCCAGATTAGAGGAAAAGACAAAGACGTGTCCACTTACTGGCTAAAGAACAATAAGACACTACATCCATCGGACCATCAAAGGATGAGATTCAAAATGAACAAATCCTTAAAGATAAAGAGGGTTGAAAAAGCGGACGCTGGCCTCTACACGTGCGTTGCTACGAATGACTGCGGCAAAAATACGTATACTATACAGCTTTTTGTTGAAAGGCCAACGACGGACCCAAATTTAACGCCAGCTGCTCCAAAATTCACAGTATCAGCAGCTAAACTGGCACGCAACCTCCTCGCATTTCCCATCGGTAACTCAGTGAAACTGGACTGTTCTGCCGATGGATATCCCCGTCCCACGGTGAGATGGTATAAAGATGGAGCATTGTTTCAGCAGAGAGAGAGAAGGAGCAGGCTCAACTTGAGTCCGTGGACTCTCTTGCTAACTATGAAGGACTTGGTACCGAGTGACACTGGAAAGTACACTTGTAATGTGAGCAACGCGTATGGGTGGATCAACCATACTTATTATGTGGATGTTCACGACCGCGTTCGAACCGAGCCAGTGGTCTTACCCATGCAAAACGTCACCGTTTATGTTGGGGAAAATGCAACGTTACTGTGCAAAGCGTTAAGTGATTCCTTGCCTCATTTCCAATGGCTGCGATGGTTTCTCTCTTCTTCAAATGATTCAACCAACAGTACAATCGAGCATCCACACTACGAAGTCATTGAACAGAACGAACAAGACTTGAACCAACATTTAGTTTTACCACAAAGCAATAACAAGTTTGAGTTTCATGGAGTGAAGCTGACTTTGGTTAATGTAACAAAAAAGGACGAAGGAAAGTACACGTGCATTGTTGGAAATGCCGTTGGTTACGCCATTGAGCAAGCGTACATCATAGTTTACAAAAAGAGCGACATACAAGATGTCTCGCCGAAGCATAGGAATTCTTCAGATGACAAACAAGATATGAAGCATGTAAATTCCACAGATGGAACGCCGGAAGTCCGTGGTCATAGAGACAAGAAGCCTAGAGCCAGTAGGTTCCAGTACCCCGAGGTCTTAATTGGAATGCTGGTCGGCGCGGTTGTCCTGTTGACTGTTGCGTTCGGTTTGTGTTACTGGCAGATGAAGAAGACTCGGGCGCGGTCGGCGGCGGCGAGGAGTCGCCGACCTGGGATCGATTCCCTTCGAGTGAGGCACGCAGTGCAGAATGAGTACGTTGTGGTAGCAGACCTGAACAGAAGCACATAATTTGATCACGTACAAATTCGTATTGAGAGAAGTCGTTGGTCCGATTTGTTCTATTTTGTGTGCATATTTTTTCTCGCTTTTTCTGCTATACATTGTCAAGGATGTATTGGGAAGCCTTACAGTACAAGTAAATATCCTTTTTCAAAGCAAAATATAGTCAGAATGATAGTAAGTAGCACTTTATGAAAGGGAATGTTAACGTTCTGAATTTCATATTTTATACTTTTAGCTTCTAGTTTGTAAAATAGAAAGAGGAAGCAAGGAAACAAAATGGCCAATTCGCAGATTCGTCACGATTCCTTCCGTCTTATAGTGGTTCCCGTTAAGGTGGGGGtgaacgtgaatttgagtgaaattttaagaggtttaaagaagggatagaagaaagaaaattatttttgaaacaccaccaggttgtcaggggactgtttgggtgtccatctactaaatttaaacttcaaattctaattttaaaatcacattaaatctttaatatttcttatttctccaaatatAATTTTACTAATCTTTGagaaaactatctcttcccaaacatccccaaaaatcacccaaaaatttacaaacgccgctaaacatagctttatgaaatgagctgagggttttgggaatgcttgaaacgcgaacgagatattcccATTAAGCCTAAGTTAAGCGGtgggaaaacgggcttcaggtgtacccccgccttaagtccATAGTGTCCACCAATTAGTAGATATAATTTCTTCTCTGTCTTCCATTTGGCACCAATATGTGTTCCTTTTGGCAGCAATATGTGAATATTACTTATTTTACTCAGTTCGATTATAGCTTTTTAGTCGCACTAAGTAAATTTACCACATTTTATAAATATATGTTTGTAATTTAAATCTAAATTCTTTCTGGTAATAAAGCGtgcgttgttgttgttgcactaaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N441	Fibroblast growth factor receptor-like 1 OS=Homo sapiens OX=9606 GN=FGFRL1 PE=1 SV=1
Q91V87	Fibroblast growth factor receptor-like 1 OS=Mus musculus OX=10090 GN=Fgfrl1 PE=1 SV=1
Q7TQM3	Fibroblast growth factor receptor-like 1 OS=Rattus norvegicus OX=10116 GN=Fgfrl1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000177 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013106 all species →	Domain	Immunoglobulin V-set domain	Interproscan
IPR052615 all species →	Family	Fibroblast growth factor receptor-like	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19890 all species →	FIBROBLAST GROWTH FACTOR RECEPTOR	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for ENSVBPP00000029422.1 in Meandrina meandrites.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSVBPP00000029422.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →