Genomic Location: chr3:28022131...28039972
NR annotation: CAH3122477.1, unnamed protein product [Pocillopora meandrina]
Species Meandrina meandrites · all data for this species · gene families
| CDS |
| ENSVBPT00000031169 |
| Transcript |
| ENSVBPT00000031169 |
| Protein |
| ENSVBPP00000029929.1 |
| UniProt accession | Description |
|---|---|
| Q5D1E8 | Endoribonuclease ZC3H12A OS=Homo sapiens OX=9606 GN=ZC3H12A PE=1 SV=1 |
| A6QQJ8 | Ribonuclease ZC3H12A OS=Bos taurus OX=9913 GN=ZC3H12A PE=2 SV=1 |
| Q5D1E7 | Endoribonuclease ZC3H12A OS=Mus musculus OX=10090 GN=Zc3h12a PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001622 (this species only) · gene tree & orthology |
| Ubiquitin family | ULD|UFD|RAWUL · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00097 all species → | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | Domain | Interproscan |
| PF18039 all species → | UBA_6 | UBA-like domain | Domain | Interproscan |
| PF16207 all species → | RAWUL | RAWUL domain RING finger- and WD40-associated ubiquitin-like | Domain | Interproscan |
| PF11977 all species → | RNase_Zc3h12a | Zc3h12a-like Ribonuclease NYN domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR018957 all species → | Domain | Zinc finger, C3HC4 RING-type | Interproscan |
| IPR040546 all species → | Domain | Rege-1, UBA-like domain | Interproscan |
| IPR000571 all species → | Domain | Zinc finger, CCCH-type | Interproscan |
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| IPR051101 all species → | Family | ZC3H12/N4BP1 Ribonuclease and Regulator | Interproscan |
| IPR032443 all species → | Domain | RAWUL domain | Interproscan |
| IPR017907 all species → | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR021869 all species → | Domain | Ribonuclease Zc3h12a-like, NYN domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12876 all species → | N4BP1-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0003729 all species → | Molecular Function | mRNA binding | Interproscan |
| GO:0004521 all species → | Molecular Function | RNA endonuclease activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0036464 all species → | Cellular Component | cytoplasmic ribonucleoprotein granule | Interproscan |
| GO:0090502 all species → | Biological Process | obsolete RNA phosphodiester bond hydrolysis, endonucleolytic | Interproscan |
ENSVBPP00000029929.1.Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |