Gene detail

Detailed information of ENSVBPP00000031471.1 in Meandrina meandrites

Genomic Location: not available for this species
NR annotation: CAH3143536.1, unnamed protein product [Pocillopora meandrina]
Species Meandrina meandrites · all data for this species · gene families

Sequence

CDS

ENSVBPT00000032786

ATGGCGACGACCAGTGAAGTGTTTTCATTTTTGCGCATTTTAACCTCAAATGCATCAAATGCAACGCCAACGGAAAAGAAAAGAGACTTTGATGAAGTTCTTTTATCAAATATGGAGCGATTGAAAGATGCCATTGGCGAAAAAGGCCTATTTCCGCTGTTGGAACAGCGGTTGGGAAGCCAAACAAACGCACTGCACTTGAGAGTTAGAGAATTTTCTAATCAAACGTTCTGTGAGAATACAGATAACGGAAATCGAGATAGTGAAAAAGAAGAGAGGGACTTAAAAAAAGAAGAGGCATATCTAACGGATCGCAAAGATGAAATACGTTGGGCATTCGTAGAAATATGCTTAGAACTTCTAAAGCTACTTAAAGAATCCTTGGTCAGTCTTGTAGCTAATGACAAAAGTAGCGATCTTAAGGAGGCTGAACAGAAGAAAGGAAAACGAGGAAATGATGCTCCACCGTTGCCTGCAGATTCCCTGGGTGTGGGTGATCAAAAGACAGTGCTGACAGCCATTCAGTTTGTTGTAATTTTGGGAATTTGCCCAAATCTCATTTCCGGTGTGGGTCTGCCAGTCGAGAAGCGGTCGGGATTTGCTTCTGTACTGAACATTCAATGTGGTGTCAAGAGTGAGAGACGTTTGTTTGAATGTATAAACACGCTTGTTGACTGCATATCACAGCCTTCTCTAGGTGCCCTGGTTTTGTCAAGACATCTCAGAGATATCCTGTCTGGTCTCTTACAGATTTGCTATGCCCCTGTTTCAGCATATTCAAATAACAAATCAAACAAAACCGATTTGACAAACTTGAACTGTGACAACGGCGTTACAAACCTTTCTGAGAGTTTAGGTAATCAGCATTTACATGGTGAGAGCGTTGAGGCCAACAAAAATTCTCTCAGCATGACAGAAGTTGACTCAGAAGGGTCAGCTAGAGGTGATTCGAGTGATCAAAAACCAAGTGATGTTTACATATTAACTCCAAAAAcagcaaatggaacagaaaacAGTGATAAATTATTTATCGCCTCGTCGGAAAGGGAATTGTGTGTTCAGAATCTTCAAAGACTTCTTGACAGAATTTACCAGCCAATAGTTATAAGGGAACTGCTAATGCTTCAGGGCGGACCATCAAGTGCCCTGAAAAAGCACATGAAAAATAATTCTGGAAAAGAAAATTTGTCTGGTGATATTGGAAAGGCTACTTGTAACCAAGGAATGAAACATTCAGTAACATCATCACAAACCCCCACCTGGATGAGAAACATTTGTGGCCAACTTCTGTCTGAAAGGCTCATGAAACCAAATGGAGTGAAGGCAGTGTTGCTTGCTCTTCTTGAGGGATCAGCAGGTGGCACTGCCAATGCTAGCCCTGCTGATTGGAAAAAGTGTGATGTTATTGCAAAAGTGATAGCAAACTGTCCAAGTCAGGCAAAGTCAGTTGAGGAGTATTACAAGTTGGTGTCTCCGCAGGTGTTGCAACTGTTACACGGGCAAAGCACAGGTGTTGGAAGGTTGTTTATCAGAGCTGCTTCATGCATCATTATGGAGATGTTGGCACAGTACACTGAACTGGCACAGAAATATGTCCTTTCGTCAATTATTGGTCCTTTGGCCAAAACCACTGAGAatcaaggtacatTAAACATTGTTGGTGGTTTTGTTGAGGAGGCAACAGTAGCGAGATGTGTTGAAGATATTCACAAGGTTTTTGTTTCAGGGCCACACAATGATACCACAAGATTTTTATTGCCAATTGTCCATCCAGTTTTTGAACTCTTTTGTTTCACTCGGAAAGGAGTTTCTCATCTAAGATCTACTCTCCAAGAAATCCTTACTCGCATATTAAAGAACTCTGAGCAATATCAAGCACTCCAACTGTTGTATACTCTGGCTTTTAAATTACGTCCTCCAAAGAATTTAATGGCTTCAACATTCAAGTCCTCAACAGACTCTAACACAGGCCAGAAAAAAGAGAATCAGAACTTTCAGGTTCCCTTTATGATTGAGAATTTTGTGTTCGCACATGGGGATAATGGTGGAGTGATTATCAGATGTCAAAATGATGATGAGAGTGGCGATGCTGACAGCATCTTGAGGGATTTGCAAGGAGCTGATTTGAGTAATAGCGAAGTAAGAGCATTGTGTGCTGTGGAACTCCTAAATGGTCTGAAAAAGGATGATGTTGCTGGAGACTTCTTTATTTGCCTACTGCAGGAGTTAACAGATATCATATCGAACTTCTCTGATGATTTGAGCTCCGGAGataCACAACACAGTCTTGTGATCCTTCATCTCATTGCACTCATGTGCGAGAAGCTTGGACACTCCATTCTTAGGAACACTCCACAGATGCTCTACTTCATACAGTCTACACTGAAACGTGCCTGTGCCATTACAGATGCAGATGAGGAGGGACTGGGAACAGCATTTGTTACTGAGACGCTGACTATGGCTCTTGGAATGTTGTCAGCGGTGTTGGGTGGAGCAGTTGAGATTAACAAAGAGCACCAACCACTTGTTCAAGATCTTCTTCCTTTATTGGAATTGCTAGCTGAAGAGCATCCATCAGTAAAGATCAAGGATATGGCTTGTGATCTGAGGGTTGCCATAGCAACACATAGGGCAGTGTGGAGCCACAGAATGGACATTGCCGCAAAGACTTTAGGGAAGCATACCGATACAGAAAAGGTTGATTCTGGGTTTGCGACCACCAAAGGTACATGTAATGAAACTTCCTCTGAATTTGACAAGGCTTTTTCACAGCTCTGTGATCCTTTGCTTCCTGTCCGCGGCCACGCAATGATGAAACTAGCCTCACTGCTACGTCAGAAGGATCCCAAAGCTTTACAGGCCACTGATTCCTTGCTGAAGATTTTCCTGGAACAGCTTATACACGACGACTCATATATCTACCTGGCAGCTATTCAGGGACTTGTGTCATTGGCCGATGTCAGGGCTGATATGGTCATACCACAACTTGCTCGCGAGTTTGCTACCTGCCGGAAAGAGGCTGGGGCCACTGTATCCCGGACAAAGGATGTTGATGAAAAGGGTTATTATAAACTGAAAGAAACAGTTTCACCGGGATCAAGCCGACCTGCCAGATCTCCTGAGCTAAGAATGAAGTTAGGAGAGGCTCTTGTCAAAGCCACTAGAAACTGTGGTGAACTGGTACCAAGATATTCTCAGCAGCTCTTACCGGCATTATTGACTGGAGTTAAAGATCCTGAGCCCCTGGTCCGGGCCAGCAGTCTCTCCAATCTTGGTGATGCGTGTCAGTTGTTGAGGTTCTCATTGGGTCCAGTTGTGCATGAGATTTTCAGTTGTGTGTCAGCGGTACTGAAAACAGACAAGTCAGAAGAAGTCAGGCGCGCTGCAGTACTCGTCATTACTTTACTACTGAGGGGACTGGGGAAGAGCATAATGGAGATGCTAAGCTCAACACTAAAGGACATATACCAGTTGTTAAAGATTGTGGAGTCAACTGACGCTGATCACGTGACTAGAGTTCATGCACAGGCTGCTCTGGGGGAACTGGATTCCATTACAAGAGATTACTTGTTTCCTAAACCTTCTTTTACGAAACACATTCAAGTACTGCCTTGA

Transcript

ENSVBPT00000032786

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9C0B7	Transport and Golgi organization protein 6 homolog OS=Homo sapiens OX=9606 GN=TANGO6 PE=1 SV=2
Q8C3S2	Transport and Golgi organization protein 6 homolog OS=Mus musculus OX=10090 GN=Tango6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004055 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10304 all species →	RTP1_C2	Required for nuclear transport of RNA pol II C-terminus 2	Repeat	Interproscan
PF02985 all species →	HEAT	HEAT repeat	Repeat	Interproscan
PF10363 all species →	RTP1_C1	Required for nuclear transport of RNA pol II C-terminus 1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019414 all species →	Domain	RNA polymerase II assembly factor Rtp1, C-terminal domain 2	Interproscan
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR039600 all species →	Family	TANGO6/Rtp1	Interproscan
IPR000357 all species →	Repeat	HEAT repeat	Interproscan
IPR019451 all species →	Domain	RNA polymerase II assembly factor Rtp1, C-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20959 all species →	TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009306 all species →	Biological Process	protein secretion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSVBPP00000031471.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.