Gene detail

Detailed information of ENSVBPP00000032802.1 in Meandrina meandrites

Genomic Location: chr12:596686...616390
NR annotation: RMX57681.1, hypothetical protein pdam_00004959 [Pocillopora damicornis]
Species Meandrina meandrites · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSVBPT00000034181

ATAAATGAGTTCAGCGTGGAAGGGGGTGGTGAAGGTTTTAAAGGTGTTTTTAAGGTACACGGGAAAACACATGATGTCTTTCTTGACAGGAATGAAATTGTGTGGATACCGCAAGCGAAAAGCCGTCGAAATGAAGGTCACCTTGTTGGCTTCACGCTGTTTACCTTCAGCAAAGCTGAAAACAGAAAACTGTCCGAAGCAAGGATAACATTTGAGAGTGATGATGAAAATGTCTGTGAGACGTGGATCTCAAAGATTAATGACATTATACAGGgTATTCCTGGTAGACCTCGTAAATTGAAAGTGGTAATAAACCCCCGAAGCAAGAAAGGCCAGGCTCGGCTAGTGTACATGAAACATGTTGCACCACTGTTTGAGAAGGCTGGTATTAGAGCAGACATCATGATGACGCAATGGGCAGGTCATGCTTGGGAGTACTTCCGAACAACAGAACTATCCACTTATGATGGGGTGGTGTGTGTTGGAGGTGATGGCATTGTGCACGAAGTTGTGAATGGATTATTAGAGAAGTCCCATGGGAATGTTGGAATTGATTTGGTCGACGGCACATTACCTGAGAAGTTCAATGCTCTTCCACTTAATGTACGAGTTGGTATTATTCCTGCTGGTTCCACTGAAGTGATTGTTTATTCAGCTCAAGGCATAAACGATCCTGTAACATCAGCTATGCACATCATTTTGGGTCACACTGTATCACTTGACATTTGTTCCCTGTGGAGTGACAACAAACACATCAGATTTACATTTTCACTTGCCTATGGATTCTTGGGAGATGTTCTGAAAACAAGTGAGCAGAATCGCTGGATGGGTCCCAAGAGATACAAATGGGGTGCTGCAAGAAGGCTGTGGAAATTGAGGTCGTATGATGTGGAAGTCAGCTATCTACCGAtacagtgtacaTCATTACACTCTTTTACTTTATTAACAGAATGGAAATCATTTCACTCTGGTGTAATTGGAGTGAATTTTTACACTCTTCCAAACTTGTGTGAAATATCACCAGATGGTCCGTCACCCAGCTGTCATCTGGGAGATGGGTTCACAGACCTTGTCATTGTTAAAGAATGCTCAAGACTTCAAATGAACTCACATATACAACGGAACTTCAACACAAAAGACCAGTTTGCATTTGACTTTGTTGAAACACACCGTGTCAAAGAATGCCACGTCAGTGCCTGTACCAAAAGTGGTATTCCTGTGCATGGTACCGATAGTCCCCTACTTGGTAGTTACCGAACACGGCAGAATTCTAAAGACAGGCCAGTAGGGGTGTGGAATGTTGACGGTGAAGTGCGATGTCAGCGAGTAGAAGAAAAACGGCCAAGATCAACTTCAGAGGTCATAGATGACGAACCTTTACCGTTTGATCAAATACCAGGACCCCGGGGTAGATATGCGTCAGCATTTGAGTTTTATCGTCAAAGTGATGGGTTTTCAAAGTTTTATAAGCTAAAACAAAAGCTGTTCAAAGATTATGGTCCAATATATAAGCAGTATGTCACAGAAAAGACCCCTACCGTCCACATCATGGAGCCAGCTGACTTCAAGGCTGTGTATCGAGCTGAGGGAAGACACCCGGACAGAGCGGCTCCTCTACCAGCCCTTACCGAATATcggaaaagaaagggaaaacCTCTCGATCTGGTTAATTtccgcccAGGAAAACGTGGCGAAGAGTGGTATAGAATTCGTCAGGCCTTGGCCCCAAAAATGATGCGTCCAAAAGTTTTGGAGGAAAACATTGATAACTTCAACTCCGTAACAAAAGATACTATAGAGAGATTGGCCAAAATAAAAGGAACTAGTGGACAAGATGGAGAAATTCCTGACTTGGAAGGAGAACTGAGCAAATGGGCAACAGAAAatattttaaacattttaggCGTGGGTACCTTGGTTTTCGATACTCGAATTGGATTGTACAATGATCCACCCAATGAAGAAGCAGTGAGGTTCATTCAAGCAGTGGAAGATATGTTTATTTGCTTGGGAGTATTATTGTTGGGGTTTGTGGAGAAaaatttgttaccttatatggATACCCCATCCTTTAAAAAGCTTAGCAAATCACTGGATATCCAAACCGAGATTGGAATGATGTTTATtgataagaaaatcaaaaaGCTTGAAGAAATGGCTAACAGAGATGATCAATCTCAAGAAAATCAAGTTGTTTCTTTATTAACCTACCTGCTGGCCAAGAAGGAGTTGACTCTAGATGAAGTCTGCAGCAATGTAATAACTATGTTTGGTGCAGGTGTCGACACAACTGCTTATACAACATTATGGCTTTTGTATCATCTGGCACGAAATCCTTCTATCCAAGAAAAGCTTCACCAGGAAATATATAACATTTTGGGAAAAGATGGAGATGTAACAGCCAAAAGCCTTGCAAAATTGTCCTACCTGAAAGCTTGTGGTAAAGAGTCTGCAAGGCAAGTGAATCTTCCGATGTTTACACAGAACAGAAGAATACTATCAAAAGATGTTGTTTTAAGTGGATATTTAGTTCCTGCAAAGACCGTTATCTACCTTGACTTTTATTCTACTGGAGCGTCAGAAAAGTACTTCAGTAATCCATCAGAATATAAACCTGAGCGTTGGCTGagagaaaacaagaaagaaattgatcctTTTGCAATCCTTCCATTTGGATATGGGCCACGCATGTGCATTgGAAACAGAATAGCAGATTTAGAGATGCATCTTCTGGTTACGAAGGTAAAATTCATTATTTATAAGTTGTCTTATCTCAAAGAaagttgtttatag

Transcript

ENSVBPT00000034181

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K4Q7	Ceramide kinase OS=Mus musculus OX=10090 GN=Cerk PE=1 SV=2
Q8TCT0	Ceramide kinase OS=Homo sapiens OX=9606 GN=CERK PE=1 SV=1
Q49MI3	Ceramide kinase-like protein OS=Homo sapiens OX=9606 GN=CERKL PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001777 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19280 all species →	CERK_C	Ceramide kinase C-terminal domain	Domain	Interproscan
PF00781 all species →	DAGK_cat	Diacylglycerol kinase catalytic domain	Family	Interproscan
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017438 all species →	Homologous_superfamily	Inorganic polyphosphate/ATP-NAD kinase, N-terminal	Interproscan
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR016064 all species →	Homologous_superfamily	NAD kinase/diacylglycerol kinase-like domain superfamily	Interproscan
IPR045363 all species →	Domain	Ceramide kinase, C-terminal domain	Interproscan
IPR001206 all species →	Domain	Diacylglycerol kinase, catalytic domain	Interproscan
IPR017972 all species →	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR050479 all species →	Family	Cytochrome P450, families 11 and 27	Interproscan
IPR001128 all species →	Family	Cytochrome P450	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24279 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSVBPP00000032802.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →