Genomic Location: chr3:25130081...25132009
NR annotation: XP_020606968.1, tRNA dimethylallyltransferase, mitochondrial-like [Orbicella faveolata]
Species Meandrina meandrites · all data for this species · gene families
| CDS |
| ENSVBPT00000035816 |
| Transcript |
| ENSVBPT00000035816 |
| Protein |
| ENSVBPP00000034355.1 |
| UniProt accession | Description |
|---|---|
| Q9H3H1 | tRNA dimethylallyltransferase OS=Homo sapiens OX=9606 GN=TRIT1 PE=1 SV=1 |
| Q80UN9 | tRNA dimethylallyltransferase OS=Mus musculus OX=10090 GN=Trit1 PE=1 SV=2 |
| Q9UT75 | tRNA dimethylallyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tit1 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006354 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01715 all species → | IPPT | IPP transferase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039657 all species → | Family | Dimethylallyltransferase | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR018022 all species → | Family | IPP transferase | Interproscan |
| IPR030666 all species → | Family | tRNA isopentenyltransferase, eukaryotes | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11088 all species → | TRNA DIMETHYLALLYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0006400 all species → | Biological Process | tRNA modification | Interproscan |
| GO:0052381 all species → | Molecular Function | tRNA dimethylallyltransferase activity | Interproscan |
| GO:0008033 all species → | Biological Process | tRNA processing | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00791 | miaA, TRIT1; tRNA dimethylallyltransferase | EC:2.5.1.75 | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
