Genomic Location: chr12:7020385...7051825
NR annotation: PFX29943.1, putative methyltransferase NSUN5 [Stylophora pistillata]
Species Meandrina meandrites · all data for this species · gene families
| CDS |
| ENSVBPT00000036613 |
| Transcript |
| ENSVBPT00000036613 |
| Protein |
| ENSVBPP00000035103.1 |
| UniProt accession | Description |
|---|---|
| Q8K4F6 | 28S rRNA (cytosine-C(5))-methyltransferase OS=Mus musculus OX=10090 GN=Nsun5 PE=1 SV=2 |
| Q96P11 | 28S rRNA (cytosine-C(5))-methyltransferase OS=Homo sapiens OX=9606 GN=NSUN5 PE=1 SV=2 |
| O46385 | Supervillin OS=Bos taurus OX=9913 GN=SVIL PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001054 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21153 all species → | NSUN5_N | NOL1/NOP2/Sun domain family member 5, N-terminal domain | Domain | Interproscan |
| PF21148 all species → | NSUN5_fdxn-like | NOL1/NOP2/Sun domain family member 5, ferredoxin-like domain | Domain | Interproscan |
| PF01189 all species → | Methyltr_RsmB-F | 16S rRNA methyltransferase RsmB/F | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029006 all species → | Homologous_superfamily | ADF-H/Gelsolin-like domain superfamily | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR036886 all species → | Homologous_superfamily | Villin headpiece domain superfamily | Interproscan |
| IPR048889 all species → | Domain | NSUN5/RCM1, N-terminal domain | Interproscan |
| IPR049561 all species → | Domain | NOL1/NOP2/NSUN 5/7, ferredoxin-like domain | Interproscan |
| IPR001678 all species → | Domain | SAM-dependent methyltransferase RsmB-F/NOP2-type domain | Interproscan |
| IPR007122 all species → | Family | Villin/Gelsolin | Interproscan |
| IPR049560 all species → | Domain | SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11977 all species → | VILLIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003779 all species → | Molecular Function | actin binding | Interproscan |
| GO:0007010 all species → | Biological Process | cytoskeleton organization | Interproscan |
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| GO:0051015 all species → | Molecular Function | actin filament binding | Interproscan |
| GO:0005546 all species → | Molecular Function | phosphatidylinositol-4,5-bisphosphate binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0008154 all species → | Biological Process | actin polymerization or depolymerization | Interproscan |
| GO:0015629 all species → | Cellular Component | actin cytoskeleton | Interproscan |
| GO:0051014 all species → | Biological Process | actin filament severing | Interproscan |
| GO:0051016 all species → | Biological Process | barbed-end actin filament capping | Interproscan |
ENSVBPP00000035103.1.Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
