Gene detail

Detailed information of ENSVBPP00000035761.1 in Meandrina meandrites

Genomic Location: chr12:19553500...19577173
NR annotation: XP_020600447.1, urocanate hydratase-like isoform X2 [Orbicella faveolata]
Species Meandrina meandrites · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSVBPT00000037319

AGATGGAAGTAGAAATACTTTTAGTTGTTCCATGCTATCAAAACCAGGATAAgttccagcctgatgggccacaagACTCAGACAGAAACATTACTCACAATTCCCTGcctgtcgtttttttttttttttttttttttttttttttctttttttttttttccttttgtttaggTTATTCCAAATTACTCATCAAGAGATATGTATGACAGAATGTTTGCATTAGGCGTGACTATGTATGGGCAAATGACGGCTGGAAGCTACTGTTACATTGGGCCTCAAGGAATAGTTCATGGAACCACAATTGTTGTTTTAAATGCTGGAAGAAGACAGTTAGGAGTGAACAATCTCAGAGGAAAGGTTTTTTTAACTGCTGGTCTGGGTGGAATGAGTGGTGCTCAAGCAAAAGCTGCTGTTATTGCTGGCTGTATTGGTGTAGTAGCTGAGGTTGACGAGGCTGCTTTAAAGAAGAGGCACGACCAAGGATGGTTAATGGAATATACATCTGATGTGGACGTCTGTGTGGAACTGATCAaGAAAGCTCGCCAATTGAAGAAGCCACACAGTTTGGGATACCATGGCAATGTAGTGGACTTATGGGAACGTTTGGTGCAAGAGTATGAAAGCACTGGTGAAGTTCTTGTAGAACTTGGTTCTGATCAAACTTCACTCCATAATCCTTTCAATGGTGGATATTATCCTGTACAGGTTACGTTTGATGAAGCAAATGAAATTATGAAACACGACCCAGAGAGATTTAAAGCCCTGGTACAAGAGAGCTTGCGTCGCCAGGTAGCAGCTATTAACAAACTCACAGCTCGGGGGATGTTCTTTTGGGATTATGGAAATGCATTCCTTCTTGAGGCCAGTCGTGCAGgaGCCGACGTGTGTAAAGAAGGAGCACCACTTGGAGTTTTTCGCTACCCGTCCTATGTACAAGATATAATGGGagATATTTTCTCACTCGGATTTGGACCATTCAGGTGGGTTTGCACTTCTGGTCTGGCTGCTGATCTTGCAACAACTGATGAGATTGCCAAGAAAGTCTTTGAAGAAATAATGGAAGAAGGATTACCAGTTGACGTGAAAGCTCAATATGAAGACAACCTTAAATGGATCGAGGAGGCACACCAACATCACTTGGTCGTTGGTTCTCAAGCACGGATTTTGTATTCTGACCAGAGGGGTCGGGTGGCTTTGGCGGAGGCGTTCAACAAAGCCATAAGCGAAGGACGGTTAATGggCTGCGTTGTTATCAGTAGAGACCACCATGACGTCAGTGGAACAGACAGCCCATTCCGAGAGACTTCAAACATTTACGACGGGTCCAGCTTCTGTGCAGACATGGCTGTTCAAAATGCTATCGGAGATTCGTTCCGTGGTGCCACTTGGGTAGCACTACATAACGGAGGTGGAGTTGGATGGGGTGAAGTGGTCAATGGAGGCTTTGGACTTGTTTTAGATGGCTCTCAAGAGGCCAGTAATAGAGCTCGTCTGATGTTGTCCTGGGATGTCAACAACGGAGTTGCGCGCCGTTGCTGGTCTGGTAATGTCCATGCAAAGCATGCCATTTGTAAAGCCATGGAACAGAATCCATTACTGAAGGTCACAATTCCGTCACACGTGGAAGACGTGACGCTATTGGAGAACGCTCTTAAGCCATAAGCAAGGAAATGTATGTAAACGTTTCAAAGAAGGAATGAAGGGGGCAAACAGGCTTGACTGTGGCATCCATTTGTGAACAGGAATAGGAACATCTTAAATAAAACATGGCTTGTGGTCACACAGACTGTTTTGGAGTGAACTGTTAAACTTTATGAAAGGAAATCAGCTGGATATAAACTTTATGGACATATTTTTGACAAGTTAATCGGAATATATATTTTATGGATTATCGATAAAATCACTGTTAGGTATTTATGTAAGTTATTGGTCATGAGAACACTTTGCTATAGGAACTAATTAACTTTTGACGTTATTCGGATCTAACTTTTCCTTAATGGAGGAAGTTATAAAACTTAAAGCCGTTGGTCAAATGCATCGTTAAAGCTAACTATTTTGCAATACGGTCGAACAGGTCTAATGTATTTTAAGTTTTCTAGCCAACATAACTTTTAATCCAACGTTTTAAACGTGAAGGCCTTCGAAGACCTTCTTAGTAGAGTGCATGGGCAGATGGGTTTACGTGTATCTCAGTAATAAGTTATATATTCAGACGGCTTCGCCTATTGGCTGGCACGTCTTAGACAACCTAGAATCAAACCTGTGACATTAACATGGTTGTTTCTGTGCGAATCTCACTTGAAAGCTGTTGAACATGTTGTATTGTTACAAGGTTCAGTAAAAAGTGGCTCTAACTGTTTGTCTGTAGATGAAATCTGTGCGACAGCATTAAAACAAGAGCTATTGGGCAGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VC12	Urocanate hydratase OS=Mus musculus OX=10090 GN=Uroc1 PE=1 SV=2
Q96N76	Urocanate hydratase OS=Homo sapiens OX=9606 GN=UROC1 PE=1 SV=1
Q9NAE2	Probable urocanate hydratase OS=Caenorhabditis elegans OX=6239 GN=Y51H4A.7 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003405 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17392 all species →	Urocanase_C	Urocanase C-terminal domain	Domain	Interproscan
PF01175 all species →	Urocanase	Urocanase Rossmann-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038364 all species →	Homologous_superfamily	Urocanase, central domain superfamily	Interproscan
IPR035401 all species →	Domain	Urocanase, C-terminal domain	Interproscan
IPR023636 all species →	Conserved_site	Urocanase conserved site	Interproscan
IPR035085 all species →	Domain	Urocanase, Rossmann-like domain	Interproscan
IPR023637 all species →	Family	Urocanase	Interproscan
IPR036190 all species →	Homologous_superfamily	Urocanase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12216 all species →	UROCANATE HYDRATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016153 all species →	Molecular Function	urocanate hydratase activity	Interproscan
GO:0006548 all species →	Biological Process	L-histidine catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSVBPP00000035761.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →