Gene detail

Detailed information of ENSVBPP00000036664.1 in Meandrina meandrites

Genomic Location: not available for this species
NR annotation: XP_020625701.1, ER membrane protein complex subunit 1-like [Orbicella faveolata]
Species Meandrina meandrites · all data for this species · gene families

Sequence

CDS

ENSVBPT00000038256

atggcggcgatTAAGATTTACATGTGCGTTTTTCTTTCCTTGATTTTATGGAAGCACTGTCTAGGATTGTACGAAGATCAAGTTGGACTCTTCGACTGGCGTCAGAGTTACGTAGGGAaagtaaaattttcattttttgatgTTTCTACGCACAGCAGTAAGCGGTTATTTGTTGGAACGGAATCAAACGTCATTGCTGCTCTGAATTCGAGAACTGGTAGTATCATTTGGCGTCAAGTCTTAGAAGAGAGCGAAGGGGTGCTAGATGCGTTACTTTATCGCGATAACGTACTTGTTAGCTCCTCAAGTGCTGGAAAATTCATTCGATCGTGGGATACTAGCAACGGAGCTCTTCAATGGGAAGCAGTTGGCAAGACCGCTACTTCACCGGGAAAAGAAGTAAATTCACCTTTCCACGGGTGGAATGGTCCACAAACAGCTTTGGTCGAGTCTAAAGAAAACGAACTTGTGATTTCCCTGGCTTTTAATGTCCTAAAAGCGTTTGCACTTCAAGACGGCTCAGAGAAGTGGACACTTGATAATAGTGAACAAACAGCTGATTATTTTAGCTTCCAACATTCCAATAGTCTTTTATATCTTGTAGGGGTTCAAAATGATGTAAACATTGTCATTCAGAAGGTAAATGTAGAGAATGGACAAGTAAAAGGAGAACGACGCATTGGAGCACCTTGGATCAGCAATGGTGCCagttgtgtttttgtcaaaaaggCAAATTTGGTTTGCGCAGAAACATTCAGCAACAGCATTCATGTGATCTCCCTCTCTGACGAATCAGCTCCAGTGAAAACTTTTTCGCTGGGTTCTTTAGGGTTGGGGGTTGAAGATCTCTCTCATGGTAAACCCAGTTTGCAGTCATTTGGTTCTTACTCCAATTCGTGGGATGAGCGATCAGAGTTCCTGTTAAAACTCTCCAAGACTCATCAACTGGTCTTGAATTTAAACAATGATCGAAGCATAACAGTGGTGACAAAGTTTACTGAGCAGACTCTACTCAGTGCCGCTGTACTTGGCAACAAGGCTATTTTGGTGTCGATAACACCAATCACTGATGAATCATTAGAGCTGAAATGTTATGACTTAGACAACAAGAAAGACCTCCCAGACATGACACAAAAGGCAGCCTTGGTAGATCACGGAGAGCCAGAAGATGCTGTTGTTTACTTgttcaataaaaaagaaaatgaacttGGATATAGAGTTTTCCTGGCCACCACCGACCATGCAGTGTCATTGGTCCAGTTTCCTGGGCGTATTATGTGGTCTCGAGAAGAAGCACTTGCTGAAGTCACAGCTGTAGAAGTAGTTGAGCTGCCGTTTTCTCCATCACAGGCGAATTTTGAGACTCTCCAGGAAGAGTTTGGTGCTCATCCAAATGATGATGTTGTGTCCATGTTTATCCGTCGTATTCGTGCCCAAGTGAAACAGTTTCAAGTGCTAGTAAAGCAATTCCAAGCCTTTGTCAAAGCACAACAAGAACATGGCTTCTTTGCTGAATCAACAGATGAAGAAGAAGAGCAACTAACCAGAGATCAGTTCAACCTGCGCAAATTAGTTCTCATTGTCACATCATCAGGAAAGCTCTTTGGTCTAAATTCTGCAGATGGAAGTATTGTTTGGAAATACTTCCTCCCAAGCCTTGCGCCTTTCTCTCAAAACAACAAACAGTATTCCTTGCTTTACACACAGCGAACTGTTGCCCACTTTCCCCTGACTGCTCAATGTGTAGTGCTAGGGAAATCAAGGTCATCTGATGGGTCATTATTGCATGTTTTCAACCCGATCACTGGAAAGCCGATAGGCCCAGGACATCTTAAAGGAAATCAGTTGACTTACAGAGTGATACAGTCCATGCTTCTACCACATACTGATGCTAAACACACCAAACTTCTGCTTCTCCTTGACTCATCACTGAATGTTCATGTTTTTCCTCGCACGTCTGAGTCCATTGAGATTGTTTCTAAAGCGTCCTCGTCGATCTTCTTCTTCATGGCTGATAAAGAGAAGGGTGAATTGAAAGGATACATGCTTCTGTCTGATGTGGAGAAAAGTATCTTTCATGTCCAAGAGATGTGGAATGTAATTTTTCCACACTCCCAACAGACTATTACTAACATTGGTAAGTGTAGTCCATTGGAGCATGTTCATTCACAAGGAAAAGTTCTTGGAGACAGAAGAGTGCTTTACAAATACTTGAACCCTAATCTGATTGCAGTGGGAACTGAGGTTACGCCAGATTCCAAACCAGGAATCTCAGTTTACCTTATTGATGCTGTGACAGGGTTAATCATATTCCATGCTCGCCACAAGAATGCCAAAGGTCCTATTCACATGGTGCACTCTGAAAACTGGTTGGTGTACTGTTTGTATAACACCAAATCCCGCAGATACGAGCTCACTGTGTTGGAGATGTATGATGGATACACAGAAAGAAACAGCACGTCCTTGTCCTCATTCGATCCTCCTCCTTTGCCAATGGTACTCCAGCAGTCCTACATATTTCCAACAACAATACGCACAGCAACTGTGACTATAACAGAGCGAGGGATAACTCACAAGAATCTCCTGTTGGGGTTACAAACTGGTTACATCCTCACCCTTCCCAAAAACTACTTGGATCCACGGAGAAAGTTTGTACCCACACAACAGGACCGCGAAGAAGGACTGCATCCTTATATTCCAGAGCTGAATTTGAATCCACTGGCGTTTATAAACTACAATCAAACTGTTGCCAATCTCCACGGTGTATACACGGCCGGGTCAGGCCTGGAATCCACATGTCTGGTGTTCGCGTACGGACTGGACCTGTACTGGACTAGAATAACGCCATCAAGAATGTTTGACGTGCTGAAGGAAGATTTTGATTACTGGTTCATCTTTGGTACTCTTGGAATACTGGTGCTTGTAACTATTGTTTCTCAGAGACTTGCTTCGATTAAAATGCTCCGACAGGCGTGGCAGTGA

Transcript

ENSVBPT00000038256

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZL00	ER membrane protein complex subunit 1 OS=Gallus gallus OX=9031 GN=EMC1 PE=2 SV=1
Q8C7X2	ER membrane protein complex subunit 1 OS=Mus musculus OX=10090 GN=Emc1 PE=1 SV=1
Q8N766	ER membrane protein complex subunit 1 OS=Homo sapiens OX=9606 GN=EMC1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007485 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13360 all species →	PQQ_2	PQQ-like domain	Repeat	Interproscan
PF07774 all species →	EMC1_C	ER membrane protein complex subunit 1, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR026895 all species →	Family	ER membrane protein complex subunit 1	Interproscan
IPR018391 all species →	Repeat	Pyrrolo-quinoline quinone beta-propeller repeat	Interproscan
IPR002372 all species →	Repeat	Pyrrolo-quinoline quinone repeat	Interproscan
IPR011678 all species →	Domain	ER membrane protein complex subunit 1, C-terminal	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21573 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0034975 all species →	Biological Process	protein folding in endoplasmic reticulum	Interproscan
GO:0072546 all species →	Cellular Component	EMC complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23562	EMC1; ER membrane protein complex subunit 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.