Gene detail

Detailed information of ENSVBPP00000038023.1 in Meandrina meandrites

Genomic Location: not available for this species
NR annotation: XP_027036157.1, speckle-type POZ protein A-like [Pocillopora damicornis]
Species Meandrina meandrites · all data for this species · gene families

Sequence

CDS

Transcript

ENSVBPT00000039646

CCCGGATAATACAAGAGAAGACTTGAAACGAGTCACCGAAGTGGTCACTCGAAGAGAGTGAATTGTTTTTCTGGTTTTGCCCTCACGATAACGATAAATACAAGTTTAGAGTTGTTCCCTTGGCGGCTAGAGGAAGATATTTCACCCTGGCGGCAGTATCTTGTTGCGAGTCATCTAAGATGTCCTCATCGTCACCGGTAGCAGAGAACTGGTGTTATACTCAGATCAAAGTAATCAAGTTCTCCTACATGTGGACGATAAATAACTTCAGCTTCTGCCGTGAAGAGATGGGGGAAACATTGAAGAGTTCCACATTCTCAGCTGGAGCTAATGATAAAATGAAGTGGTGTTTAAGAGTAAACCCAAGAGGCTTAGATGAAGAAAGCAAGGATTATTTATCGCTATATCTTCTATTACTTGCTTGTAACAAGAGTGAAGTCAGAGCAAAATTCAAGTTTTCCATTCTCAATGCCAACCGAGAAGAAACAAAGGCTATGGAGAGCCAAAGAGCTTATAGGTTTGTCCAAGGTAAAGACTGGGGTTTTAAAAAGTTTATAAGAAGAGACTTCCTAATGGATGAAGCTAATGGTTTATTACCCAATGATACGCTAACATTGTTCTGTGAGGTCAGTGTAGAAGGTGATTCAGTAAATGTATCAGGTTCGTCTCATACTGCAGCACTCAAGGTCCCAGAGTGTAAGCTACCTAGACACATGGGAACACTTTTAGACAATGGCACATTCAGTGATGTTACACTGTGTACTAGGGGCAGGGAATTTAAGGCACACAAAGCTATATTGGCTGCACGCTCCCCTGTATTTGGGGCCATGTTTGAACATGAAATGGAGGAGAGTAGAAAAGGACGTGTGGAGATTAGTGACATAGATCCTGATGTGTTTCACGAGATGTTAAAGTTTGTTTACACTGGTAGCACGCCGCAGCTTCAAGGGATGGCAGATGACCTTTTAGCTGCAGCTGACAAGTATGACCTTGATAGACTAAAAGTTATGTGCGAAGAAGCATTATGTTCTAATCTAACAGTAGACAATGTGTGTGACATACTTATATTAGCGGACATGCACAGCGCAACACAACTCAAGGCACAAGCTCTTGACTTCATCAAAAGGTTTTGTAGCGTCCATCCAGATTTATTCTCCCTTGACCCCTCTCACCACAGCCGTGCAACAGACGTGATGGAGTCAAATGGATGGAAAACACTCATAAGCGACCACACGCATCTTATAGCAGAAGTGTTCAAGGCCGTCCTAGCCTCGACACAGACACCCTTGATAGGACCGCCAAGAAAAAGGCAAAAGACGACGTAAGCAGCACAAAAAATACGTATTATATTTAGGATAACtattattatatatataaaaaaaattattttggaacaGTCAGTTTTCTCTCACTTTTTGATTGATACGAACCAGTCCATGACTCTTTGGCAAAGGAATTGTTTGCCTTTTTTATTCTATAAGGACTCAGTCTTAAAAAGTCTCTCCCTTCCTTTCCCGTCATCCTACAATCTTGgagaaaactgttgaaacactcaGCAAATTTCAACTAATTTAGGTACCACAGTTCAGTTCttcgacccccccccccccccccctcccccatttcaatgttgtcaatgctgtTGTGTTGTGAAAAGAAAGTCTGGCAAACCGCAAACCCCCCAAAACAACACTGAGTGCGGGCATTATATCTTTTTTTGAGAATTCTAGGAAGATGTTCTCCCTCAATtccttctattgtttttttgcTGCAGTGGTttcatttctcttcctgttCAACCTTCACCTTTTCCTTTCTGTGTGTTTTCTGTATATGAATCCAGTATTCCTTGAAATAAGACAGGAAAACTGATTGTTCCTCAATCATGCATTTTCTCAAAAAAGATGTGTAAAATACAAGAATGTGAAATAACTAAGCAGAAGTCAAatgtacattaatttttaaGGCAAACTAATTGAAAGTAGTTCTGTAAACTTGAGTGTAACAGTGTTTCTTATAACTGGCATCATTCTTGTAGTAAGAGTATTTGGGGACGTTTTGAAACGTTTTATCATACCCCATTGACACCAAAGTGGAGAAGACGAAAAGCAGTGACGTGAAACTGAAATGAGTAGTTCAGTTtttatacaaaacaaaaacaacaattttAAATTGTGTTTAATTTAAACGTGTCCATGCTTTGCTGGGAATGGGGTATTACATATGTATGTCAATACCGACGGTGTTGTTTAAGTGCTTAAACTTTTGTCATTTTAATATCTGGGTGTAAGAACAGGTAATTTACAGTGTGGTAACCATAGAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6IQ16	Speckle-type POZ protein-like OS=Homo sapiens OX=9606 GN=SPOPL PE=1 SV=1
Q2M2N2	Speckle-type POZ protein-like OS=Mus musculus OX=10090 GN=Spopl PE=2 SV=3
Q5BL35	Speckle-type POZ protein-like A OS=Danio rerio OX=7955 GN=spopla PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007627 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00917 all species →	MATH	MATH domain	Domain	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24413 all species →	SPECKLE-TYPE POZ PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030162 all species →	Biological Process	regulation of proteolysis	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10523	SPOP; speckle-type POZ protein	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.