Gene detail

Detailed information of ENSVBPP00000040945.1 in Meandrina meandrites

Genomic Location: chr6:5816550...5851995
NR annotation: XP_016355505.1, PREDICTED: gastrula zinc finger protein XlCGF57.1-like, partial [Sinocyclocheilus anshuiensis]
Species Meandrina meandrites · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSVBPT00000042782

AAGTACCTTTTCCATTACCTTACAGGAAACTCATTTCTCTTTCGAACCAAAGTATTCACTAGTGCAAGAGGCCTTGCAAACCTGCATAAAGAAAAGAAGTCTCATACATGCCAACAGTGTGGCAAGTCCTTCAGCCGAGCAGGGCATCTCCAGCAACATAAACGAAttcatacaggagagaagccatttacatgcaaacagtgtgGGACTCTACAGGGACATAAAAGAATACACACAGGAGTGAAGCCATTTACATGCAAACAGTGTGACAGGTGCTTCAGCCGAGCAGAACATCTCAAGCGACATACACGaatacacacaggagagaagccattttcatgcaaacaaTGTGGCAAGTGTTTCAGCCAAACATCAAGTCTTCAGGAACATAAACAaatacacacaggagagaaaccATTTacatgcaaacagtgtggcaagtgcttcAGCCATCCAGGGACTCTCCAGGGACATAAAAGAAcgcatacaggagagaagccgtttacatgcaaacagtgtggcaaatGCTTCAGCCGGGCAGAACATCTCAAGCGACATACACAaatacacacaggagagaagccatttaaatgcaaacagtgtggcaagtgtttcagCCAAGAAGGAATTCTTCATTATCATAAGCGaatacacacaggagagaagccattTACATGcgaacagtgtggcaagtgcttcAGCCATCCAGGGAATTTCCAGAAACATAAACGaatacacacaggagagaagccattTACATGCAAGcagtgtggcaagtgcttcATCCGAGCACAGCATCTCAAGCGACATATGCAaatacacacaggagagaagccattTACATGCAAACATTGTACTAAATCCTTTGGCGAAGTCGAAACTCTTCGGCGACATGAGCGAAGACACACGGGAGAGAAACCACTTACATGCAAACAGTATGGCAGGTGTTTCCCCCAGTGCCATAAAAGATTGCACAGAAAAGGGCAGCCTGGGCAACTTGAGGCACAAGAGCTAACACACTGTCGTTCAATGTTTGCCCCTGAGGGTGACGGCAATTCTCTCACAGTTACATCCTCTTTACAGGTTTCCAgagagaagccattTACATGCAAGCAGTGTAGCAAGTGCTTCATCCGAGCACAACATCTCAAGCGGCACATACGaatacacacaggagagaagccattTACATGCAAGcagtgtggcaagtgcttcAGTCAAGCAGGAACTCTTCAGCAACATAAACGaatacatacaggagagaaaccATTTacatgcaaacagtgtggcaagtgcttcAACAATTCAGGGACTCTCCAGGGACATAAAAGAATACACACAGGAGTGAAGCCATTTacatgcaaacagtgtggcaagtgcttcATCCGAGCAGAACATCTCAAGCGACACATACGaatacacacaggagagaagccatttacatgcaaacagtgtggcaagtgctttGGCGAAGCCGTAACTCTTCGGCAACATGAGCGAAGGCACACGGGAGAGAAACCATTTACATGGAGTGTCCAGGAACATAAACGAATACACACAGGAGTGAAGCCATTTACATGCAagcagtgtggcaagtgtttcatCCGAGCACAACATCTCAAGCGACATACACGaatacacacaggagagaagccatttacatgcaaacagtgtggcaagtgctttGGCGAAGCCGTAACTCTTCGGCAACATGAGCGAAGGCACACGGGAGAGAAACCATTTACATGCAAACAGTGTGGAAAGTGTTTCAGCCATGCAGGGAGTGTCCAGGAACATAAACGAATACACACAGGAGTGAAGCCATTTACATGCAagcagtgtggcaagtgtttcatCCGAGCACAACATCTCAAGCGACATACACGaatacacacaggagagaagccattTACATGCAAACAGTATGCCAGGTGTTTACCCCAGCGCCATAAAAGATTGCACAGAAAAGAGCAGCCTGGGCAACTTGAGGCACAAGAGCTAACACACTGTCGTTCAATGTTTGCCCCTGAGAGTGACGGCAATTCTCTCATAGTTACACCCTCTTTACAGATTTCCAagaagccatttaaatgcaaacagtgtggcaagtgcttcAGTCAAGCAGGAACTCTTCAGCATCATAAGCGAATACACGCAGGAGAGAAGCCATTTacatgcaaacagtgtggcaagtgtttcacCACAACAGGAAATCTCCAGCGACATGAGCGAgtacacacaggagagaagccatttagatgcaaacagtgtggcaagcgCTTCAGCCGAACAGAAATTCTTCAGCAACATAAACAaatacacacaggagagaaaccttttacatgcaaacagtgtggcaagtgcttcAGTCAAGCAGGAAATCTTCAGCAACATATGCGaatacacacaggagagaagccatttacctgcaaacagtgtggcaagtgcttcCGCCATTCAGGAACTCTTCAGCAACATAAACGaatacatacaggagagaagccatttacttgcaaacagtgtggcaagtgcttcAGCCATGCAGGAACTCTTCAGCAACATAAACGaatacatacaggagagaagccatttacttgcaaacagtgtggcaagtgcttcAGCCATGCAGGAACTCTTCAGCAACATAAACGaatacatacaggagagaagccatttacttgcaaacagtgtggcaagtgcttcAGCTATGGAGGAACTCTTCAGCGACATAAACGaatacatacaggagagaagccatttacctgcaaacagtgtggcaagtgtttcacCACAACAGGAAATCTCCAGCAACATAAACGaatacacacaggagagaaaccttttacatgcaaacagtgtggcaagtgcttcAGCCATTCAGGAACTCTTCAGCAACATAAACGaatacatacaggagagaagccattcacttgcaaacagtgtggcaagtgcttcAGCTATGGAGGAACTCTTCAGCAACATAAACGaatacatacaggagagaagtcATTTActtgcaaacagtgtggcaagtgcttcAGCCATGCAAGAACTCTTCAGCAACATAAACGaatacatacaggagagaagccatttacctgcaaacagtgtggcaagtgtttcacCACAACAGGGAATCTCCAGCAACATAAACGaatacacacaggagagaaaccttttacatgcaaacagtgtggcaagtgcttcAGTCAAGCAGGAAATCTTCAGCAACATAAGCGaatacacacaggagagaagccatttacatgcaaacagtgtggcaagtgcttcAGGCGAGCCGTAACTCTTCAGCGGCATGAGGGAAGacgcaaacagtgtggcaagtatTCCAATAGAGCGGAAAGTCTTCAGAGACATCAAAGAGTACACGCAGTAAAGAATCAGTTTACATGCAAACAGTGTGGAACATGTTTCAGTCAAGCACACGCACTCCAGCGCCATAAAAGATTGCATAGTAAACGCAAGACTGGGCAGCTTGAGGCACAAAAGATTACTCACTGTCGTTCCATGTCTCTACCTGAGTGTGACGGCAATTTTCTCACAGTGACATCCTCTTTACAGGTTCCCAGTCCAATTGCCCAGGTTGAAACATACAGCTGTTGGATTTGTCAGGAAGAATTAAGTAGTCATGCTCTCCTTGTTGAACACTATAACAATCatatgaaataa

Transcript

ENSVBPT00000042782

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000228 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050169 all species →	Family	Krueppel C2H2-type zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23232 all species →	KRAB DOMAIN C2H2 ZINC FINGER	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for ENSVBPP00000040945.1 in Meandrina meandrites.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.