Detailed information of ENSVBPP00000041346.1 in Meandrina meandrites

Genomic Location: chr6:10715374...10719254
NR annotation: KAJ7380139.1, protein with role in RNA processing [Desmophyllum pertusum]
Species Meandrina meandrites · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6PBA2Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1
Q0VCF9Protein LSM12 OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2
Q3MHD2Protein LSM12 OS=Homo sapiens OX=9606 GN=LSM12 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008416 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09793
all species →		ADAnticodon-binding domainDomainInterproscan
PF21166
all species →		LSM12_LSMLSM12, LSM domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019181
all species →		DomainLSM12, anticodon-binding domainInterproscan
IPR047574
all species →		DomainAD domainInterproscan
IPR048478
all species →		DomainLSM12, LSM domainInterproscan
IPR039683
all species →		FamilyProtein Lsm12-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13542
all species →		LSM12 HOMOLOGInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for ENSVBPP00000041346.1 in Meandrina meandrites.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23643LSM12; protein LSM12-Circadian rhythm - flyko04711deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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