Detailed information of ENSVBPP00000041598.1 in Meandrina meandrites

Genomic Location: chr13:8795417...8803349
NR annotation: XP_027035850.1, molybdenum cofactor biosynthesis protein 1-like [Pocillopora damicornis]
Species Meandrina meandrites · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5RKZ7Molybdenum cofactor biosynthesis protein 1 OS=Mus musculus OX=10090 GN=Mocs1 PE=1 SV=2
Q1JQD7Molybdenum cofactor biosynthesis protein 1 OS=Bos taurus OX=9913 GN=MOCS1 PE=2 SV=2
Q9NZB8Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens OX=9606 GN=MOCS1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001789 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04055
all species →		Radical_SAMRadical SAM superfamilyDomainInterproscan
PF06463
all species →		Mob_synth_CMolybdenum Cofactor Synthesis CDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007197
all species →		DomainRadical SAMInterproscan
IPR013483
all species →		FamilyMolybdenum cofactor biosynthesis protein AInterproscan
IPR050105
all species →		FamilyMolybdenum cofactor biosynthesis MoaA/MoaCInterproscan
IPR010505
all species →		DomainMolybdenum cofactor biosynthesis protein A-like, twitch domainInterproscan
IPR013785
all species →		Homologous_superfamilyAldolase-type TIM barrelInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22960
all species →		MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0051536
all species →		Molecular Functioniron-sulfur cluster bindingInterproscan
GO:0006777
all species →		Biological ProcessMo-molybdopterin cofactor biosynthetic processInterproscan
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0061798
all species →		Molecular FunctionGTP 3',8'-cyclase activityInterproscan
GO:0061799
all species →		Molecular Functioncyclic pyranopterin monophosphate synthase activityInterproscan
GO:0019008
all species →		Cellular Componentobsolete molybdopterin synthase complexInterproscan
GO:0051539
all species →		Molecular Function4 iron, 4 sulfur cluster bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSVBPP00000041598.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Meandrina meandrites tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Meandrina meandrites, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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