Gene detail

Detailed information of ENSVTRP00000000676.1 in Madracis senaria

Genomic Location: :...
NR annotation: XP_027057267.1, glutamate receptor ionotropic, NMDA 1-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSVTRT00000000759

ATGTTAAATGGAGATGGTAAAACCGTAAATGACGTTGCGATATTTTACAGCGCTTCAAATGAGTATTTACGTAACATTGTACAACACACAGAGAACATGTTCCTTGCCAACAGACCAAGGAATAATAATGTACCCAAGGATATTTCCGAGGTTTATGTAAACCCATTGCCCTTAGACACCGACAAGATAGCGCTTGGCGAAGGCTCTATCTCCGACGTTTGGAATATCTCATCGCAGATTGTAGGTGCAATTTTTGTGGACGTGAATAGGGattctctttttctttcatCATTTCTGGAGGGATTATCTATCCCAACTATTGGGATCTTTCAAATCAAAGGGCAACCAAGAACTCAGGAGAGTCCTGCAGATTTTACGAGAGTCGCTCTGCCATCGGTCAAGTATTATGCACAGACCATTTGGGAACTCGTAAAAAAGACAGAACGGCGCAGCCTCAGCTTGGTTTTGTCCGCTGATTCCGATGGACAGGAATTTGCAGACTCAATGGTCCAAGTGgcaaaagaagagaaatggtTTATTAGAAAGATAGTTTGGCTCGTTGGAAACAACACGCTATCACTGCAAAATGTCGTAGAGTCCGTCATTTCACAACAAAGCGATGTTGTTCTTGTACACAGCAGAAACAGAGACAATGGAGCTTTGTTTCGAGTGTTAGCAGAATCTCGCAACACTACTGACTCTCTATGGGTCATTACTGATGTAACTGAATATgggatatcaaatattaatatcCTCCAAGATGGCTTGATAAAAGTTAGCGCCAGAAAAGGGAATCTTGATTGCAGTTTGTACACAGACGCCATTTACGATGCTCTGCTCCTCTATCAAACTGCGTTTGAAAAGGCGCTTGGAAAAGATGTACATCAGACTTCTGAAGATGCATGCTTTACAGAAAATGGAGATATTCGGGATCTAGTCAAAATGCGCTTGAAAGAAACATTCATTGAAGGTCGAAGCTCTTTGTTCGTGAAACCTTCACTCCATGAGAAATCCAAGACAGCATTTGAAATATGGAACCTCCGACGTGATACAAATGGTGCAAAAAAGTGGACCCTTGTGGGGCTGGACACACCGACAGGGTTTGCCCTTGACACCATTAAGGCCCCTAATGGGAACACTGTCACTGCACCTGCTGTGCCAGCGACACATACCGTGCGAGTACCTGTGAATGAGTACTACCCTTGGGTGCAGATTGAGGACCCTCGAATGGATGGCAGAGGAAGTTACTACTGCATTGGAAGAGGCCAACTTTgttataaatatcacaacgtAAGTAGGACAGACAAGACCACACTGTGCTGTTCGGGTGTCTCTATAGACCTGCTTGTCATGATGCAGGACGAACTGGGGTTTCAGAGCGAGATCTATTTCACCCCAGACGGTAACTATGGCGACCTAGACGAGGAGACGAATACGTGGAATGGAATCGTTCAAGAAGTGTTATCTGGACAGGCGGATTTCGCCATTGACATATCAGTAAATTCTGTAAGGGCAAAGTACCTTGAGTTTGCAAATTCATTTATCCACCTGGCTTTGAACGTACTGGTTTTAAAGGATTTGCAAGTTAATCAAGaAATCCAGTGGAGCTCTTGGCTGGAGCCGTTCCAGTATGAACTGTGGTTCTTCATTCTTGGGTTTATTAATGTCATTTTAGTTGTGACTTGGTGGATTGACAGAAAGAGTCCTTATGGGCACTATCGACAACTAAACAGTGGAGATGACGGTTTCACTTTGTTAGATTCTATGACGTATGTATGGGGAGTGGCTTTTGGAAAAGACATCGGTGCTGAAAAGACTCCCCATAGCGGCAGTGCACGATGTGTCTCCACATTTTTCGCATTCTTCGCTTTAATTGTTGTTAATACTTACTGTGCAAATCTGATGGCTTTTTTGGTTCAAGAACAGTTTGAGCTTCCTATCAGCGGAATAAGGGACGAAAAGATTCGACATCCGTCTCTTACGCCGCCCGATGGTTTTAAACTTGGAGTTCAAGAAAACTCCCTGGAGGAGAGCTACTTCAAATTTCACAGCGAAGACTTATTCCGTGAAATTTACCACGTCAACCTAAAGGTTAATTTCGTAAGAAATTTCGCAGATGGCCTTGAAAAACTCAAAAACAGggAAATTCACGGGCTGGTCGGAGACTACCTTTCACTAAGCCAGATTGCTAATAACGACGAAAACTGTTCGTATAGTCTAGCTGGACCGAACTTTTTCAACTTTGGACTGGGAATAGCAATGCCAAAATCGTCGCTATGGTTACAGGATATCAATCAAGCGGTAATAAAACACCAAGAGAACGGGACAATACAAGCCATAGAACATCGATGGTTCAACAAAAAGAGCTGCGATCTAAAACCATTCAAACAGATCGAGATTATCAATTTGAGCGGTTTGTTCATGGCAGTGGTCATCGTTATTTGCTTCTGTACGCTGGCGATTTTCGTGGAGTTTACCGTTGTGTTCGCCATGATAAAGTTCGGCGATCGACTCGGCGCGTTTGGAAAGTTCGTGAAGAGGTTTGTTTTTAACGCGAATGAAGGAGAAGAAGAACAACTTAACATGCGATACTCATTTCTACTGAGACGCCAGCAAAAGGCAAGGTGGGATATTCCTGCCGCTAATGCGAGAGTCACAGAATTAGAACTTGGTTTTCATAACAGTGCATACTGCTTCTCTCAAGAACAGTCACGATCACTGGGTCAGGTGAACTCTGACGGGTCAATTTACCACGGAAACGGAATGATCAGAATGAATGGAGTATCTCAAACAAACAACTATGATGACATCAACAGGCAAAATACTAGAACTAGAAGTTTGAAGGAAAGTGGCATGATGACAAAACTTTAA

Transcript

ENSVTRT00000000759

Protein

Uniprot

Uniprot term	Description
Q01098	Glutamate receptor ionotropic, NMDA 2C OS=Mus musculus OX=10090 GN=Grin2c PE=1 SV=2
A7XY94	Glutamate receptor ionotropic, NMDA 2B OS=Xenopus laevis OX=8355 GN=grin2b PE=1 SV=1
B7ZSK1	Glutamate receptor ionotropic, NMDA 2A OS=Xenopus laevis OX=8355 GN=grin2a PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00497	SBP_bac_3	Bacterial extracellular solute-binding proteins, family 3	Domain	Interproscan
PF01094	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF10613	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001508	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR001638	Domain	Solute-binding protein family 3/N-terminal domain of MltF	Interproscan
IPR028082	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR001828	Domain	Receptor, ligand binding region	Interproscan
IPR019594	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR015683	Family	Ionotropic glutamate receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05208	GRIN1; glutamate receptor ionotropic, NMDA 1	-	Ion channels	ko04040	deepkoala