Gene detail

Detailed information of ENSVTRP00000004137.1 in Madracis senaria

Genomic Location: :...
NR annotation: XP_022802719.1, conserved oligomeric Golgi complex subunit 4-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSVTRT00000004416

actgtatggtcatcagttgggagaattacaTGATTGtacctttcagatcttgggagtgaaagggttaaatggagTGGTTGTTATCAGAGGTTTCactattttgaaaatattttctacTTTTCTTCTGATAGGCTTGTGTGGATGGTGTGCAAACAGCACTAAACACTGAGCACTTTGAGCAGGTTCTGATTTGGCTGGAGCCTTTGTGTTACTCCATGAAGCAGAGATGAAACTAAAAAGAATAGTGCATGACAAGTTTGAGGCTGCCATACAGAATGGTGACAGAGGCTCTGTTGAAAGgtttttcaaaatttttccaTTACTTGGTCAGCATCAAATTGGACTGGAAAAATATGCAAGATATTTGTGCTCTCAGATTGCTGCCCAATCCCAAAAGAATTTGGACAATGCGGTTGCTGTCAAAGATTCAGATCGTCATGCAAATGTTGTGTTTGCCAACACCCTCACCTTGCTGTTTGAGTACATTGCACGCATGGTGGAAGAACATCAGCCATTTGTAGAGACTTACTATGGTCCAGGTAAAAtgtttattcttctgcaagCTATGCAGACTGAATGTGACAAGCAGGCTAATCAAGTTGTGGGCCAGTTTATTAAAAAGAGACAGTTCACAGAAAAGtttAAGTCAGTACAGGGAAGTCAAACATTCAAAGGTTCTTCTGCTAACCTTGACAGATATGACCCTAGGGAGCTTGATGTTGTCTTGCGGGAAGTGGTTGTGATGAATGCGAGGGCTGAAATGTATTTACAGTTTCTGGAGAAAAGGATCACTgaTGACATGGTAAATGTGCCAGAAGAGGAAAAAACAGAggAATTATCAGGAATTCAAGACAAAGTGATAGCCAACTGTGAACTCAACAGAAGAATGCAGGAGCTTATTGGAAACTACATTTACATGGAAGAATATTTTATGAGAGAAACAGTGATGAAGgCTGTAAAGATGGATGTCACAGAAGGTGGTGATGACGAGGCTGTCACATCCAGCATGGTGGATGATGTCTTCTTCATTGTACAAAAAGCTGTCAGACGCGCCTTGTCCAGTTCTAGTGTGGATGGAACATGTGCGATGCTAAATCATGCTTGCGCTCTTTTGTCATCAGATTATCGTGATGTGTTAACTGCCAGATTAAAAGCTGGTTTTCCATCTGGCAGTCTTGATTTATCTGGAATGTTGCAAGGGAAGATACAAGTGGGTTACTCCACAACAGCTGAGAACGCAGCTGCCAGGAAGGCTGTCCTTGTGACACTTAACAATCTTGAAGTTAGCAGCAATAACATTCAGAAACTGAAGAAAGATCTTGAGATTGAATGTGACAGGAACCTTGCTTTTGGAGAAGCGGCCAAACTGAAATTAGAGAGCTGCCTTGCGGACTTGATGAACACATCAAATATCTTCAAGGATTTACTTCAGGGTGGGATATATCAACTGTGTTCTACTGCTGTCATACCAAGATTGAAACCCCTTATCGATGGCTTCAACTCAACAAGTCACAACATATCCGAGGAGGAATTTGCCTTCTATGAAGTGAACGATCCATTTGTTCAGAATTTCGTCACAAATTTGGACTCAATCTTAACATCCTTTAAGGGTCCGTTGACACTTTCCAACTATGACTCTTTGGTAAGCATGGCCGCGACGGAGATAACAACTCAACTGGAGACCTCGGTCATGAAAGCAAGTTTTAACAGACTGGGTGGTCTTCAGTTCGATAAGGAACTGCGTTCATTGGTTGGTTACCTGACAGCTGTCACTCAGTGGACAATACGAGACAAGTTTGCGAGACTTACACAGATTGCCACTGTTCTCAACTTAGAAAAGGTGGGTGAGATCATGGATTACTGGGGCCCTAATTCAGGACCAATGACATGGCGACTTACTCCAACAGAAGTCAGACAAGTGTTATCGTTAAGGGTCGATTTCAGAAGTGAAGATATCAACCGACTGAAGCTCTAAAAAGCAAGAtagtttttacaaaaaaatacgGGAGAATATTCTCAAAGAATAATTTAGCCGGtgtagaaaattaaaaaataaactataGAGAAATTGTAAATAATAATGGAAGCTAATTAATATTGCCTCTTTTAGGTTATGAAATGTTATGTCACGAAACTAGGAACACAAACGGGAAACTATTATATGTATAAAATACTTGCGTTCGTGGTCGTTGGAGATCGATAGAAGCAAGTACAAACAAGTTTTCAAATTCATTATACAACCTTATTGGTAACTTtaggtttaataatatttgtcgtgctaatacaatgaatgaattagaggaaaaacaaaaaacaaaagtgcatgactggagaatacttgggggaaactaaattcccatacaaagaatattctccaatactaaacatactaaaatgaagaagtaaaatttaaatgcggcccaaaactaacctaattaaattgcatactaaaattgacactaaaaattaagaagtaaaatttaaatacggcccaaagctaacctaattaaattgcatacttgtcactcacgagttacacctgatttaaaattgacacaaatgatctAATAGATAGGACTTAAAACTACTTATTAAATGAAGGTGCATACATAATGTTCGATGGAATATTATTCCAGTCTGTTATGTAgcgattgaaaaatgaaaatttaaatcgTTCTTTATGTGTTAATTACCCATTTCATGTTATGCGGCGTGGACTGTTAGCAGTCTTTTTTTCTCTCAATATGGGatgagagcggcgagagcttagagtgagaagagactgggacgagacaaggacgagacagggtgtgtcacgcacgcaGACCACCCTTTTTTcatccataccacaattatgcgttcgctttccctccacgctcgtaggaccgtaagaggaAAAAAATGACTATTAGTAGTCTATCGATATgtgtac

Protein

Uniprot

Uniprot term	Description
Q5R7R6	Conserved oligomeric Golgi complex subunit 4 OS=Pongo abelii OX=9601 GN=COG4 PE=2 SV=1
Q9H9E3	Conserved oligomeric Golgi complex subunit 4 OS=Homo sapiens OX=9606 GN=COG4 PE=1 SV=3
Q3MHG0	Conserved oligomeric Golgi complex subunit 4 OS=Bos taurus OX=9913 GN=COG4 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08318	COG4_m	COG4 transport protein, middle alpha-helical bundle	Repeat	Interproscan
PF20662	COG4_C	Conserved oligomeric Golgi complex subunit 4, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048682	Family	Conserved oligomeric Golgi complex subunit 4	Interproscan
IPR013167	Domain	COG4 transport protein, middle alpha-helical bundle	Interproscan
IPR048684	Domain	Conserved oligomeric Golgi complex subunit 4, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24016	CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006890	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0007030	Biological Process	Golgi organization	Interproscan
GO:0017119	Cellular Component	Golgi transport complex	Interproscan
GO:0048213	Biological Process	obsolete Golgi vesicle prefusion complex stabilization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20291	COG4, COD1; conserved oligomeric Golgi complex subunit 4	-	Membrane trafficking	ko04131	deepkoala