Gene detail

Detailed information of ENSVTRP00000007845.1 in Madracis senaria

Genomic Location: :...
NR annotation: CAH3151488.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P29674	LIM/homeobox protein Lhx1 OS=Xenopus laevis OX=8355 GN=lhx1 PE=1 SV=1
Q90476	LIM/homeobox protein Lhx1 OS=Danio rerio OX=7955 GN=lhx1a PE=2 SV=1
P37137	LIM/homeobox protein Lhx5 OS=Xenopus laevis OX=8355 GN=lhx5 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00412	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR049618	Domain	Lhx1/5, LIM domain 1	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR001781	Domain	Zinc finger, LIM-type	Interproscan
IPR049619	Domain	Lhx1/5, LIM domain 2	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR050453	Family	LIM/homeobox transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24208	LIM/HOMEOBOX PROTEIN LHX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030182	Biological Process	neuron differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09372	LHX1; LIM homeobox protein 1	-	Transcription factors	ko03000	deepkoala