Gene detail

Detailed information of ENSVTRP00000010125.1 in Madracis senaria

Genomic Location: :...
NR annotation: RMX42159.1, hypothetical protein pdam_00009400 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSVTRT00000010711

ATGTTCCCTACTTGCCCAAGTCAGTCGTGTGCTTCAGGAAAAGGAATCAGTCAAGCGATTATCGGACTTGAAGCAAACTTTATTTTGACAACAAAAAATGCTAAAGGCGAACAATGTTATGAAAAGCGTGACTATGTATCAGTTGGCCATGACTGTGCGACAGAAGTGCGAGTCCAAGATAACAAAGATGGCAGGCACCTGATAGTCTGTGATTCAGAGAATCACAGAATTCAGGTATTTGAACTGAGTGGAAAATTTGTAACAAAGTTTGGAACAAAAGGGCACAAGATAGGAGAGTTTAATGTACCACTCTCTACAGCGGTTTTAGGTGATGGCAACAAgcaaatcaaaatattttctcTGTCCGACTATAATGAACActgtatcaaagtttttgacaatAGTGGAACTTTTCTGTACGAATTTGGAAAACAAGGGACGGGAGACGGGGAGTTCAACGAACCTAGTGGTTTATCAATTAACAAGGCAGGGCACCTGATGGTCTGTGATTCACAGAATCACAGAATTCAGGTATTTGAACTGAGTGGAAAATTTGTAACAAATTTAATGTCAGTACCAACCTCCACAGCGGTTTTAGGTGATGGAAGGATAGTTGTGACTGACTTTGGTAACCATCGCCACGAGAATAAAGAATTGGAGTTTTTCTGCAAAGATTGCTCGGTTGCAATTTGCTATTCCTGTGTTGCCACTATTCATGACGGTCACCCCAAGATACTTTTGGAAGAAGCTGCAAACGAGCGGAAGTTACAAGCGAAGTCTGTGATTGAACGTCACAAGAAAATAGCACAAGAAAAGAGACGTAAAATTGCTCAACTTGACTCGGACTGTGTTGAAATTTCAGAACATGTTGCTAACGTGAAAAGAAATGTGCAGCAGTTTACTGATAACATGATCGCTGTTATCGTAGCACAGAAGCAAGAGATCTTTGATGAAGTGGAAAATCAAGCGAAAGAATCAATCCAGGGTCTGGGAATACAAAAAAGCGAGATTGAAAACCAACTGAAAGTAACTGAGGCAGGTATCGACCAAACTGCAGCTCTTTTGAAACGAGACATAAGCGCTGAAATCATACAGACAAACAAAATTCTAGACGAAACATTTCAGGGTCAAGTTGATCCATTTTACCCTCCTGTTGACAATCAAAGTGTTCTAGAGTTTGATTTCGtgagaaatgaaaaattatttgattGTGCTTGGACTGACAAAATTGGCTTTGTCAAAATGTTCCCCACTTGTCCGAGTCAGTCGAGTGCCTCGGGGAAAGGAATCGGTGAAGCGTTTATCGGACTAGAAGCAAACTTTATTTTGACAACAAAAAATGCCAAAGGAGAACAATGTTATGAAAAGCGTGACTATGTATCAGTTGGACATGACTGTGCGACAGAAGTGCGAGTCCAAGATAACAAAGATGGCAGCTACAAGATCAGCTATTTTGCCAAAGGAACGGAAAAGTGCCGGCTGTCAGTGAAGGTAAATGGAGAACATATTCGTGGCAGTCCTTTTGCTGTTGAAGTCAAACCCAGACAGTTCAGACCCGTGCTATCTTTTGGACAACAAGGCTCGGCTGCTGGAAAGCTTAGCAAGCCTTGGGGAGTGGCAGTGAACGAACGTAATGAAATTGCAGTGACTGAGGTTGGTAACCACAGAGTTCAGGTATTCAGTAGTGATGGAACTTACTTAAGATCTTTTGGTACAAAGAATGATAAACAGGGAGAATTTAACTGGCCTTGTGGGATAGCATTTGATAATAATGCCGGAAACATTTTCGTAGTAGTGgacaacagtaacagtaacgtTCAGCTGTTCAGTGGGCAGGGGGAGTACCTGAGCCAGTTTGGTGGAGAGGGAGATCTTGATCACCAGCTTAAGTTTCCCCTCGGTTTATCCCTGCACAGTGATGGGACTATGATTGTTGCTGATAAAGGCAACAAgcaaatcaaaatattttctcgTACCGGTCAGTTTATACGTAAAATTGATAAGGAGGGCTTTTTCAACTTACCCGTCCACTGTGTCGAGCATGATGGATATCTTGTAGTGTCCGACTCTTATGAACACTGTATCAAGGTTTTTGACAGGAGTGGAACTTTTCTGTACAAATTTGGAAAACAAGGGACGGGAGACGGGGAGTTCAACGAACCTGATGGTTTATCAATTAACAAGGCAGGACACGTGAGTGTCTGTGATACAAAGAATCACAGAATTCAGGTATTTGAACTGAGTGGAAAATTTGTAACAAAGTTTGGAACAAAAGGGGACAAGATAGGAGAGTTTAATGTACCAGTCTCTTCAGCGGTTTTAAGTGATGGAAGGATAGTCGTCATTGAGTTTTGTAATCACCGCGTTCAGATATTTGAGTAG

Transcript

ENSVTRT00000010711

Protein

Uniprot

Uniprot term	Description
Q6PFY8	E3 ubiquitin-protein ligase TRIM45 OS=Mus musculus OX=10090 GN=Trim45 PE=1 SV=2
Q9H8W5	E3 ubiquitin-protein ligase TRIM45 OS=Homo sapiens OX=9606 GN=TRIM45 PE=1 SV=2
Q8MQJ9	Protein brain tumor OS=Drosophila melanogaster OX=7227 GN=brat PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF17170	DUF5128	6-bladed beta-propeller	Repeat	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan