Gene detail

Detailed information of ENSVTRP00000016858.1 in Madracis senaria

Genomic Location: :...
NR annotation: XP_027053593.1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSVTRT00000017810

GCATGTTCCGGGAAGCGTGGTAACCTCGAGGAGTACGGTTTATTTTCTCTGcttttctgttgttttctttcCGTTTTAATAGTCCTAGAGTGTCCAACAATTGCCAGAAAACTAAGCAATAACTTAACCAGTCTATTTAAAGTCTTCGACGCTGCAAGGTCCACGTACTCTGCTGAATTTATACGTGGCGAACCTTCATTGAAATCGGACGGATCATGGAAACCGCAGGCGATAGTGACCTAAccggagaaaaacaaaacgaaggACGGTCATCAGTTCAAGAGAGATCTTCAGCTGAGAACAGTCCATCTGCTAGTCCAAATAAACCTGACCAAAGACCTGAGCCGAGAAagAGTTTATTttcaaaaggaaagaaaaggaaaaagactGACAAGGACCTGAATGCACCCAAAGCCCCTCTGACAGGTTATGTcaggttcctaaatgagcaccGGGAGAAAGTGCGAGCTGAGAATCAGAATCTTCCATTTCATGAAGTCACAAAAATCCTTGGAAATATGTGGAGCCAATTACCTTCTCAGCAAaagcagACATATTTGGAAGAAGCAGAAAAAGATAAAGAACGTTACATGAAGGAACTGGAATTGTATCAGCAGACTGATGCTTACAAGAACTTTGTAGCCAGACAAAAGGCAATGAAAAAAGATAGTGGTGATGGTATCAATGGTACTCAgGGAAATGATGACTTGTTCTGCAGCGCCTGTAACTTGTACTTCAACTCACCACATAACAAGCGTGAACACATGTCTGGGAAGAAGCATTTTGCAGTGGTCTCTGCACAGATGGACAAATCTGAGAAGTATGAGAAGCCAAATGGAAAAGATGTATCTGACGCAAAAAAGGTGGAAGAGACCTCTGAGTCTCAGCCGCTACAGATTCCGTTAGATGGAGATATTCCAATATTTACAGAGGAGTTCTTAAACTATAATAAAGCTCGTGAAAATGAACTGAGAAAACTGAGGAAAGTGAACACAGAGTTTGAGGAACAGAATGCCATTCTTAGTAAACACATAGAGAATATGAAGAAAGGCATTGACAAACTGGAAGGAGAAAGGAAAGACCAACAGAATGAAATTGGTGCACTGCAGAGACACCTTGCCAAGTTGCGACAAATAATTTCCCGTAGCTTTGTTGATATTCAAATTCCAGGAGTGACAGATCCATTAAGCTCGGAGACGGTGGATTCATTTGTAGCAAAACTGCAACAATATATTCAAGAAAATAGTAAAGAAAACCTGGAGTTAACATCCAGAATAAAAGACATTATAGCTTCCCTGGACTACCCCAATTGCTTAACAGAGGTAAACAGCTGATGCACTACAATATGTACACACATCACTGACACTGGCTGTAGTTACCTGTTatgttgagttttttttttttcttcagtggCATTGTAAAGCTAGTAAACTGTAGCTTTATCTTCCTTTGTATAACTGCTGTATATATTGTTGTCTTAAAGTTATGTGGGAAGACTGAGAACAGTAGATGAAAATAATTAGCATATAATTCTGACAGTCAAGAAACTCACAGAAGACAGGTTGTTTTTAGATTACTGTTCAGCTGTTGTTCAGAATTTTTCTCAAAAGATGAATGTTGGATTAAGAGGTACTTGCCTTTATtgtataaacaccaatgaaatctcacgtgagctttcgcgcgaaaacatgatatcttcacactgttgctatggttacataataaattgtgCCTCACAGCAAAAAGTGAAATGgattggtatttcattggtgtttataaaataaaatagaacatTATTTACATGGCCTCTTGGAGATATGAcatttctcttcttgtgttgaTTGATTTTGacataattaaactttaaatctgtgaataatttataatagagggagcccaaaatttaaaaaccttgtggtttctgatgggcttcctggccaactttatttaatttttcacttgtaactattttttattgtggcaaaaaaataaacttaactcgaaaaaatatttcacgagtgagcgcaggaaatgagtgaaatatttttcaacactcaaagagaagtttcgtatctccgcgcggccatgtaatatccgcTATGTATTGATATCCAGCAAGATTGTAACTACATGTAGAACTTACAATGTAGGAAACCCTGAGTTTGTACATCAGTACATACAGTACACAAATATCAATAACTAAACTAAGGGTAGTGAGCATAGAAGAATATGAACTGTTAATTTAAAACTGGCACGTGAGGCTTTAGTTTTGTTGCAACTTTcgaattccttttttttttttttcaatgtacCTCGTTTGGGTTGATAAAGGt

Protein

Uniprot

Uniprot term	Description
Q9NP66	High mobility group protein 20A OS=Homo sapiens OX=9606 GN=HMG20A PE=1 SV=1
Q9DC33	High mobility group protein 20A OS=Mus musculus OX=10090 GN=Hmg20a PE=1 SV=1
Q6AZF8	High mobility group protein 20A OS=Xenopus laevis OX=8355 GN=hmg20a PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12171	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	Family	Interproscan
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071	Domain	High mobility group box domain	Interproscan
IPR022755	Domain	Zinc finger, double-stranded RNA binding	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR003604	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR051965	Family	Chromatin Regulation and Neuronal Gene Expression	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46040	HIGH MOBILITY GROUP PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24660	HMG20A; high mobility group protein 20A	-	Chromosome and associated proteins	ko03036	deepkoala