Gene detail

Detailed information of ENSVTRP00000017502.1 in Madracis senaria

Genomic Location: :...
NR annotation: XP_027052918.1, probable ATP-dependent RNA helicase DDX58 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSVTRT00000018516

ATGGCAGTTTCAGAAGCAACTTGGGTGGATCTTATTAACGAAAGAATGCCACATTTAATAAAGGAAGTCGCACCAACCAAgttgctaccctttttaaaattaccgaaatgtGACGAAGAGAACATCGTATGCGATGAAAGGAACATGGGCCCCGCTCAGGCGACATGGACTCTTTTGAACAAACTGAAGAAACAGAATGGACCAAATGGCCGAAAGACGTTCGACGCGCTTGTTAGAGCTCTTAGAAATGTAGGAAATCAGCAATCGGCACTGCTGCTTGATCCCCACTTCAAAGTTCCTTCTGCCTCAGAAGAAATCGAAGATGAAAACTGCGCTCGACTTGGAATTCTGGGTACAGCAGCAGAAATTGGCATTAGAATCCGTTTATTAAACGAAGAAACAAAAAAGTATTGTGAGAAATGGGAGCAAGCAATCTGGAGTAaatttggagatatcagatccGATAGCACCCTATATCTACGCAATCAACTGCATGAGGGTTTACCCGAAGGCGCAGCTTTCTCAGCGGTACATCAAGAAACCAAAGATAAGTTGCCAGCTTGTAAGCTGCGCGTGTCTCAGAAGTCAGCCGCTGATCAAATATGGGAAGATTATGGTAATGGAAAGCTGAGGGCCATTCTCAAAGAAAACTTGCTAAATGGAATAGGTGCCGATAATTGTCATCTTAAAATGCATATTCATATTATGAAGGAGGAATATGAATGGGCGTGTAACGTTTTGGcagGTGGTAATGCAACTGAATTATCGGACGAAgctcagaaaatgaaaaaagttcGCATTCCTCCAGTCTTTCTTGAAAAAAGAGGAAGTCGGAAACTTGAACTCCGTTCATACCAACATGAACTTGCAAGTCCTGCGTTGAAAGGCAAAAACTGCATTATTTGCGCGCCGACAAACAGTGGAAAGACTTATGTTGCACTGGCCATAGCTAAAGCACACCTGGAAGTGTTCAGAGAAAAAAGAGACTACAAGGGTGCTACACGTATATCTCGCCCAAAAGTGTTGTTTATTGTGAACAAAGTTAATTTGGTTCTACAGCAGAGGCAGCGGTTTGATTACTACATGTCCAACAGCTATGGCTATGATATTACAGACATATCGGGAGCCAATGCCCAAGACAAACAGCTCGACGAGATCACTGAAGAGAATGACGTGATAGTTCTTACTGCCCAGATTCTGGTTGACGCCCTTAAGTCCAGAAGAGTCAGCATAACCGATTTCTCTTTACTCATATTTGACGAGTGCCATCATACGGATAAAGGCCATCCGTACAACGACATCATGCTTAAATACTTAGAGATTAAGTATTCTTCTCGAGGTGGTTGGGACctgagagaaaaagaaaagcttccgCAGATCATTGGACTGACGGCTTCTTTGGGAGTTGGAAAAGCTCGGAGCAGGATTGAAGCCCAAGATCACATTCTTCAGTTGTGTGCAAACCTTGACTGTTCCGTAATTGTTACTGTAGAAGAACATAAGCAGGATCTGAAAGGAATGACGGGAAGGTGCGTACGTACTTGCCACGAAATAGCGGATGGTGAAATGGATTACTTTGACGACATCCTAAGAGGTGTTATGATCGCGATTGAGGGGATGCTGCCGCGGTTACCTGGGAGAAATGGCACTCCTCATAAACGTGGAAGCCAGCAGTACCAGCAATGGATAAAGGAACTGGATCGGAATTCAGTCACCCAAAAAAGCCGAGAACAGTTTACTTTAGTACAGCACTTACAGGTATATAATACTGCTCTGGCCATCAAGAAAAGCTGCCGAGTCAAAGATGCCCTAAAATACGTCACGGAATTTCATGACAAACAGAGCGAAGACAAATTTAAGAATATTGATCGAAAATTAAGAGCACTGTACGAGAAGGCCAAAAAAGATCTCACCTTCAAGATAAAAGAGAAAGGAGAACTGAAAAATCCTAAATTAGAAGCTGTTGCCTCACTGTTGAAAGAAAAGTATCAAGCATGCGTAGAGGAAGGAGGCCAACAAACAGCTAAAGGAATGCTCTTCACTAAAACGCGCGAAAGTACCAAAGCACTGAAGGCCTGGCTTGATGAGAATCCCGATCTGCACTTTATCAGGGCAGAACGCCTTGTGGGTACTGGAAAAGGAGAGGATGGAATGACCCAGTGCCAACAAGAGGAAGTCATCGCTAATTTCCGCAGTGGCCGTATAAACCTGTTGGTTTCTACTACAGTTGGCGAGGAAGGAATCGATATACCTGACTGCAAATTCGTCATACGTTATGACGTCAGAGGTAATGAAATAGCCAGCGTTCAGTCCCGTGGGCGCGTACGCGACAGGGAGGGACAGTATGAAGTAGTGGCGGGAAAAGAGACCGGTGTTattgaaaaggaaaatcttaatgtGATCAGAGAAGAGATGATGGAGGATGCAATCAAAGAGGTGAAGGCTATGGATGAAGACGAATACAGAAGGAAGattttagaTCTTCAAATGCGAGCTATCTGCCAAcgtcaaagaaaagaaacgtccaagaagTATGAGAAAGACAAGAGACATCAAGACAAGGTTAAATTGTTTTGCCGGAAGTGCCAGGTGTTTGCTTGCAGTGGAGTCAGCATCCGATGTATAAAGGAAGCCCATCACGTGGTCATTGACAAAGACTTTCCGTCCAAGTTTTACTTTAAGAAAAACAAGTGTCCCAGGATGGTTAATGGGGTTGAACTGACAGGGCCTTTGCACTGCCAAGATTGTGATGCAGAGTGGGGTGTGATGCTGAAGTATCAATCGAAAGAATTGCCTTGTATCAAGGCTTCCTGCTTTGGATTTGAATTCGAGGACGAGGATGGTGTGACAAGATCCTTCTCCTTCAGAAAGTGGAAAGATGTACTCTTTCATGTAAAAGGCTTCGATCTCAGTGAAACACTGGCTGTAGATGGTAGTTTGGATTTTCCAGAGCTGAGTTTAGATTAG

Transcript

ENSVTRT00000018516

Protein

Uniprot

Uniprot term	Description
O95786	Antiviral innate immune response receptor RIG-I OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2
Q9BYX4	Interferon-induced helicase C domain-containing protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3
Q6Q899	Antiviral innate immune response receptor RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16739	CARD_2	Caspase recruitment domain	Domain	Interproscan
PF04851	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF18119	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan
PF11648	RIG-I_C-RD	C-terminal domain of RIG-I	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031964	Domain	Caspase recruitment domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR006935	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR041204	Domain	RIG-I-like receptor, C-terminal	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR038557	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR021673	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan