Gene detail

Detailed information of ENSVTRP00000021039.1 in Madracis senaria

Genomic Location: :...
NR annotation: XP_020625146.1, protein crumbs homolog 1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSVTRT00000022284

aaaatttCTAAAttggaaaaactgaaaatagtttGGAAAGCGTTTTACTTCTTTTTCAACGCTACCTCACAGATGCAAGTATCATCAGGGGTTATTCCCCTCCAGAATGGTTTTGATTTCAGTTTTAGAACTTGTAGTGGTGGAGTTTTGCTTGATCAAAAGGGGATAAGTAATGGTTTTGTTCGACTTGAAGTGGTTCCTACAACAGTGAATTACTCCATAACAcctgttttatttattgcaaGCCACCTAAAAATGACATGGAAAACTAGTAGCGTTCAGGATTCTGTTACAGTAGGCAAAGATCTGGAGAAAAATATTCTTTATAAAGTACAGTTTACTGCTGGCAGTGGACAAGTAAATTCAACACTCAGCTTAACTGGATTGACAGCCCAATCTGTGCAGATTCCTAACACTATTTTAGGATTTGCAAATTCAGGTCCACTTTATGCTGGGTACCCTGTGTCTGGAGGAGAAGGTTTTGTTGGTTGTATTATAAGTGGAAGAAATGTTCAGCTGGTGAAAACCATCTCATCTGTGAGCATCAAAGAAAACTGCACACTTGATAACCAACTGGGATGTCCAGCAAAAGTATGCCCTGCTGGTTTTACTGGAGACTACTGTGAAATCGATATTGATAACTGCGCAGGCGCCCAGTGTCATCACTACAGCACTTGTGTCGACCTTGTCAATAACTACAACTGTAGCTGTGGACCAAGGTGGTCTGGCCGATTGTGTGATATCTTCCTGGGGTCATTATGCAATAAGACTAATAACAATAACACTGATGTTTGTGAGAATGGGGGCATTTGTCGTGATACtcttgacaaaaacaactacacgTGTACTTGTAATCCTGGCTTCACTGGTTGGAACTGTGAGCTTGAATTTAATCCTTGTGACAGCTCTCCGTGTGAACAAGGTGGAACTTGCTCGAAGTTTAATGATGCCTTTttatgtttttctcacaaaggtTTTAAAGGGAAGAAATGCGAGGAAAATATAAACGATTGTGCCATATTACCTTGTGGTCCTGGCTCTTGCATTGATGGAATCAACAACTACACCTGTAACTGCACTGGATCAGGTTACACTGGACCGACATGTACAGATGACATTGATGAATGTGACACTATCAATCCCTGTCATCCCAATAACACTGACCAGTGTATTAACCATGCCGGGACTTATCAGTGTGTCTGTAAACAAGGATTTAATGGCAAGAACTGTTATCAGAATATTGATGACTGTCGTTGTAATCCCTGCCAAAATGGAGGGACTTGTGTTGATGAAGTAAGCGGCTATCGCTGTGAGTGTATAGAAGGTTTTAATGGAACCTTGTGCGAGAATAACATTGACGACTGCGTGAACCACACATGTAACAAAAACTCATTGTGTCAGGATGGGGTTAATAATTACACTTGTGTTTGTAAGCCTGGTAAGTTTGTGTTCATTGATGACTGTGCACATGTAACAATAAACATGTGCTTAGAATTGCAGCTGGGTTGTCTGAAAATTTTGAAGCAAATGCTGCCGGCTATTTTTGGCAACCCTGGAATTGGTATAAACCTCTGCCTGGATGGTTTGCTGTTGCTCTCAACTCATCCAatcagagatTCAAttgtattgttaaaaaatattaatgcaATTATAAGGCAGCATTTACATTATTTCGTTTTGTATTTTGTCATAGGATTTGCAGGCCAGGACTGCTTGGTTAACATCAACGACTGTAAAAATGACTCTTGTGTGACAAATGCAACTTGCATCGATGGAATAAATAACTTCACATGCCAGTGTCCAATAGGTTACTATGGAGAGTTCTGTGACTTGGAAATTGATGAGTGTCAATCAAACCCTTGTCAGAACAATGGAACATGCGAAGATTTGATTGGTGGCTTTAGCTGTACCTGTGTATCAGGATTTAATGGCAGTCAGTGTGAATACAATATTGACGATTGTCCGCCACATGGCTGTAACAATGGAACTTGTGTTGATGGTGTTAACAGTTTCAGGTGTGAGTGTAATCCTGGTTTCAATGGTACATATTGTGAGATGGACATTAATGAATGTGAAGgtcaGTCATGTAACTGTGGAACATGCGTTGATCTTCCTGGCTCATATCGCTGTGATTGTGATCCATGGACTACAGGCCGACACTGTGAGACTGACATTGATGAATGTGCTAATAAAAGTCAATGTAATGTGGATGTGGATCAGGGTCGCTGCTTTAATGAGGATGTCACCAGCAAAGCTTGTAACAACCGAACAGGATTTGAATGTTTCTGTAGGAATGGCTTCACAGGTGCAAACTGCCACGTTAATGTTGATGACTGCAGGCAACTTACGCCATGTAAAAATGGTGCAACATGCACAGATGGAGTTGGCGACTACAACTGTACCTGTGTACCCGGCTGGACAGGGCCGAACTGCGAAGTTGACATTGATGAGTGTCAGTTTGGATTCTGTCAGAATAATGCAACATGTACTCAGAATCATACTATCAATAACTACACCTGTGACTGCTTATCTGGAACAAATTGTTCCATTGACATTGATGAATGCGCATCTAATCCATGCCAGAACAATGCAACATGTAACGACTCCATAGCTGACTTCAACTGCGCATGCCCAGCAAACTTTACTGGCAAACGCTGTGAAGACAAGTTATCTTCGTGCATTCCCAATCCTTGCCACAACAATGgcacctgtgatttacaaaacaACAACTTCACTTGTACTTGCGCACCCGGCTTTGGAGGGACACTTTGTGACAATGTTACCACAGTTGGATTCAATGGCTCCTCGAACATGAATTTTCACGTCGGAAAACAAACGTTTGAAGTTTCCTTTCAGTTTAGGACAACTCTTAATCACGGCCTGATAGCTGCTGATTCATGGAACAATTTTCTTGTGTTCCTTGATAAAGGTGAAGTACATGTATGGTACAATAACACGTATAAACTTTCAGCCGGTAAAGCGGCTAATCTCAGCAATGGACTTTGGTACACAGTTGACGTCAATATTTCTGGAGACTCTATCACTCACAAAGTCGATAATTCATCTTGTGGCCAACAGTGCACAGTTTCTTTACCTTTGCAAACACAAGTTAACATTTCAAAACTTTACATCGGCGGATCTTCATTTCCTGTAGCTTATCTTCACAACACGCTGTATAATTTTACTGGTTGTATCCAAGATGTAATGATTGACAGGAAGACAGTGATCCCTACAGGAGTAGGGGTGGAGTTATTTAACACTGTTACTGGGTGTCCACGCAGTGAGGTGTGTGTGTCCAACTCCTGTGCAAATGGCCAGTGTGTTGATGAATGGATCAAGTTCAGCTGTGAATGTACACGGCCATGGATCGGTCCACGCTGCAATAGAACTTTGACTCCGGGAACTTTTGGTGCAACTGAGCCGTTAAACACTGCTAGCAGCAGACGGCGTCGTAATATTGAGAGCATGCGTAACGCGACCTTTGCTAAATTCCTCACTAGTGGTACAAGTTTTGGCGCAACTGGGGAGTTATCATTCTTCATCCGAACTCGCGAACTTAGAGGATTAATAATACTGATGACAGACAGTCAGAGTAATTATATCAGTGTTGTTATTGATGAAGGAATATTGGTTGTACAAACTACTTTAAATGGACGCACCTCCAATGTTACCATAAATGGAAGCGTTAGTGACGGACAGTGGCACTTTGTTGAAATCCAAGGGAATACGTCACGCTTTGATAACCTTACTCTGGTTACGGGACCCATTGCTGACAAAGATATCAGCCTGACTCTGACCTACATTGGAGGACTTGATGACTTCTCTCTTTACCAAGGTGCTAATCTCATTAAAACTCCATTTCGAGGCTGTTTGCAGGACATTCAACTCAACAACAAACTGTTTGATTTCGGGTTCAATGATACTTCGTTAATTTCCATGGATCGTTACAAGTTACTTGATGCAGATGGTTTGAGTGAGGATTGTAAGGGGATGAACGTGTGTCGATCATTACCGTGTGGTGATGGAGGCTTCTGTAAAGACTTGTGGAACAAGTATCAGTGCGACTGTAAACCGCGCTACGGTGGCCCGGACTGTGCACTGTACGGCTGCTCCCTGGTTAACCTGTGCCCTCATGATACCACCTGCTTAGATGTCGGAGAAAACTATGAATGTTTACATCCCTTCACTTTCAATGGCAGTGTAAGCCGTGCAGAGTTTACCTTCGTCCCAAATGTTAATGTCAGCACGGACGTGTCTCTACGAGTGCGAACGAGGCAGGCCTCAACTGTcgctctattgaCTCTTTTCCTTCCTTGTTTTGGTCAGTTTCCTGTGTATAAATCaacctttctttcctttctttttacaGACGATCTAATAAATGACGGCCAGTGGCATAATATCATGTTCTACATCACCAGTAATCATAGTTATGTGACTGTAGACGGTTCCACTACAATTACTTCATCCAGACTTCctaacaatgaaataacaagCTTATTAAACAGCTCTCCAGTTGTGGTAGGCGGGTCAGTGTTCAAAGGATGCTTAGATAACCTTCGTATTGGTGGCCTGCTGCTTCCATTTGTTGATTACTACAACAGTACCTTGAATGTTAGTCACGTGACTCCTTCAAAGCCTCACTTCCATGTTAACGCCACAGGGATGCAGCTCGGTTGCCATAGTGATGACGTTTGTGTTCCGAAACCCTGTGTACGGGGCATGTGCAGTGATGTTTGGAATCAGTTCACTTGCGCATGTCCAGAAGGATGGGCGGGGCTTATTTGTACTCTGACAGCAAACATGACATGCGCACACTCCCCGTGCGTCAATGGCACGTGCTATAATGTGACTGACGTTGACATGGCAACCAATCAGAGCCAATTAAGTGACGTAGGATTTGACATGTTTCAGTGCAACTGTACCCCAGGATTTGAAGGAAAGCTGTGTAAGAATGCTACAAGCGAATGTATCCCAAATCCGTGTCAAAATGGCGCCAACTGCACTGATCTACATCTTAACTATAACTGCACATGCGCCAGGGGCTACACTGGAATAAACTGTACAATAAACATTGACGAATGTGCTAACCACAACTGTACAAACAATTCTACTTGTATTGATGGAATCGGCTCTTATAATTGTTCTTGCCTGACTGGTTTTAATGGAACTTTCTGTGAGCAAGATATCAATGAATGTGATATTATTAAGCCATACGGTCCTTGTAACGCGACAGGCACAAGGAACTGTTCCAACATTGTCGGCGGCTTTAAGTGTGACTGTAAACAAGGACACTTCGGTGACTTTTGTGAGTACGACCCTTCTATGACTTGTGAGATACTAAAACCGTGCCTTCATGGAGGGAATTGTTCAGATAATTCGACAGGTTTTAGCTGCTCCTGTCCCGAGGGTTATAATGGGACACTGTGTCAGTTTGATATTCATGAATGTGAAGACGAGCCATGTATGAACAATGGAACATGCATTGACAGCCATGTTAACTCCACTGCTGCTTATTTCCCGGGCTACAAGTGTAACTGCACGATTGATTATACAGGACAGCGATGTGAAAAGAAAATCGACCCGTGTGAATTTGAACCTTGCAAAAACAATGCAACGTGCGAGAGGTTAGCGTATAACAAGTACCAGTGTAACTGCACACCCGAGTATAAGGGAGAAAACTGCTCCATCTTCCAGGCATATCCCTGCAGAAACAACGCGACTTGCGTGAATTTGAATACAGAAGGAAAGTATTTGTGCAACTGCACAGAAGGGTTCGGTTATACAGGGCAGACTTGTAATGAGCTCATCAACAAATGTGATTCGAATCCCTGTCAAAAAAACGGAAAATGTACGACCTCCACCAACTCATTTAACTGCCAATGTGAATCTGGCTGGGTGGGCAAAACATGTCAGTTTGAAGATCCCTGCATCAATAATCCGTGTGAGAACGGTGCAACTTGCGAACCCAATGATCACTTTGGAAACTTCTCATGTGTTTGTCCAGAATATTTCACTGGAATAATGTGTCAAAAGTCGCTCGAACGACCAAATGAAGACGAATCAACAGGTTTAACCAACCCTATTGGTGGAGTAATAGCCGCATGTATCTTTGCTATTATTGTGGTTTTGGCTTTGCTGTTAATGGTGTGGAAAAAGCGATTGAGTGTTGGTTCATATAATCCCAATAAAGATGAAAGAACAACTGGACATGTTGAATTGACCACAATTGCCACCAAACCTCTATCACAAGAAGTACTCCTATAA

Transcript

ENSVTRT00000022284

Protein

ENSVTRP00000021039.1

KISKLEKLKIVWKAFYFFFNATSQMQVSSGVIPLQNGFDFSFRTCSGGVLLDQKGISNGFVRLEVVPTTVNYSITPVLFIASHLKMTWKTSSVQDSVTVGKDLEKNILYKVQFTAGSGQVNSTLSLTGLTAQSVQIPNTILGFANSGPLYAGYPVSGGEGFVGCIISGRNVQLVKTISSVSIKENCTLDNQLGCPAKVCPAGFTGDYCEIDIDNCAGAQCHHYSTCVDLVNNYNCSCGPRWSGRLCDIFLGSLCNKTNNNNTDVCENGGICRDTLDKNNYTCTCNPGFTGWNCELEFNPCDSSPCEQGGTCSKFNDAFLCFSHKGFKGKKCEENINDCAILPCGPGSCIDGINNYTCNCTGSGYTGPTCTDDIDECDTINPCHPNNTDQCINHAGTYQCVCKQGFNGKNCYQNIDDCRCNPCQNGGTCVDEVSGYRCECIEGFNGTLCENNIDDCVNHTCNKNSLCQDGVNNYTCVCKPGKFVFIDDCAHVTINMCLELQLGCLKILKQMLPAIFGNPGIGINLCLDGLLLLSTHPIRDSIVLLKNINAIIRQHLHYFVLYFVIGFAGQDCLVNINDCKNDSCVTNATCIDGINNFTCQCPIGYYGEFCDLEIDECQSNPCQNNGTCEDLIGGFSCTCVSGFNGSQCEYNIDDCPPHGCNNGTCVDGVNSFRCECNPGFNGTYCEMDINECEGQSCNCGTCVDLPGSYRCDCDPWTTGRHCETDIDECANKSQCNVDVDQGRCFNEDVTSKACNNRTGFECFCRNGFTGANCHVNVDDCRQLTPCKNGATCTDGVGDYNCTCVPGWTGPNCEVDIDECQFGFCQNNATCTQNHTINNYTCDCLSGTNCSIDIDECASNPCQNNATCNDSIADFNCACPANFTGKRCEDKLSSCIPNPCHNNGTCDLQNNNFTCTCAPGFGGTLCDNVTTVGFNGSSNMNFHVGKQTFEVSFQFRTTLNHGLIAADSWNNFLVFLDKGEVHVWYNNTYKLSAGKAANLSNGLWYTVDVNISGDSITHKVDNSSCGQQCTVSLPLQTQVNISKLYIGGSSFPVAYLHNTLYNFTGCIQDVMIDRKTVIPTGVGVELFNTVTGCPRSEVCVSNSCANGQCVDEWIKFSCECTRPWIGPRCNRTLTPGTFGATEPLNTASSRRRRNIESMRNATFAKFLTSGTSFGATGELSFFIRTRELRGLIILMTDSQSNYISVVIDEGILVVQTTLNGRTSNVTINGSVSDGQWHFVEIQGNTSRFDNLTLVTGPIADKDISLTLTYIGGLDDFSLYQGANLIKTPFRGCLQDIQLNNKLFDFGFNDTSLISMDRYKLLDADGLSEDCKGMNVCRSLPCGDGGFCKDLWNKYQCDCKPRYGGPDCALYGCSLVNLCPHDTTCLDVGENYECLHPFTFNGSVSRAEFTFVPNVNVSTDVSLRVRTRQASTVALLTLFLPCFGQFPVYKSTFLSFLFTDDLINDGQWHNIMFYITSNHSYVTVDGSTTITSSRLPNNEITSLLNSSPVVVGGSVFKGCLDNLRIGGLLLPFVDYYNSTLNVSHVTPSKPHFHVNATGMQLGCHSDDVCVPKPCVRGMCSDVWNQFTCACPEGWAGLICTLTANMTCAHSPCVNGTCYNVTDVDMATNQSQLSDVGFDMFQCNCTPGFEGKLCKNATSECIPNPCQNGANCTDLHLNYNCTCARGYTGINCTINIDECANHNCTNNSTCIDGIGSYNCSCLTGFNGTFCEQDINECDIIKPYGPCNATGTRNCSNIVGGFKCDCKQGHFGDFCEYDPSMTCEILKPCLHGGNCSDNSTGFSCSCPEGYNGTLCQFDIHECEDEPCMNNGTCIDSHVNSTAAYFPGYKCNCTIDYTGQRCEKKIDPCEFEPCKNNATCERLAYNKYQCNCTPEYKGENCSIFQAYPCRNNATCVNLNTEGKYLCNCTEGFGYTGQTCNELINKCDSNPCQKNGKCTTSTNSFNCQCESGWVGKTCQFEDPCINNPCENGATCEPNDHFGNFSCVCPEYFTGIMCQKSLERPNEDESTGLTNPIGGVIAACIFAIIVVLALLLMVWKKRLSVGSYNPNKDERTTGHVELTTIATKPLSQEVLL

Uniprot

Uniprot term	Description
P82279	Protein crumbs homolog 1 OS=Homo sapiens OX=9606 GN=CRB1 PE=1 SV=2
Q80YA8	Protein crumbs homolog 2 OS=Mus musculus OX=10090 GN=Crb2 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00054	Laminin_G_1	Laminin G domain	Domain	Interproscan
PF02210	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR001791	Domain	Laminin G domain	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991	Cellular Component	protein-containing complex	Interproscan
GO:0045197	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16681	CRB; protein crumbs	-	Hippo signaling pathway - fly	ko04391	deepkoala