Gene detail

Detailed information of ENSVTRP00000024904.1 in Madracis senaria

Genomic Location: :...
NR annotation: PFX14034.1, Peroxidasin [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSVTRT00000026360

ATGAATAACACTCAGGCAGTGAACCGTATTCTACGAGATCAACATAATGATACTGATCGTGATTCTTCGGGAAAACTAGGAATTGGAATTACAACAGGGACTGTGGTTAACACATTGCTGATACTCCTTATCGTGGGAGGGAATCTTCTGGTCATCGCAGCTTATGCTAAAAATCGCCGACTCCACACTGGAACCTATGCACTGTTTGTGAGCCTTGCGTTGTCTGATCTTCTTGTTGGAGGTGTCGCCCTCCCAATCCGAATCTACGGCTCGATAATGAACTGGAAATGCTTGCCAGGATACCCCGATCTTCAGCGCTTGGTGGAAATTGTGAAATGGATGCATTACTCGAACAGCGCTGTCAACCCATTCATCTATGCTTTCAGGGATCCAGAGATGAAACGAGAATTTTTGCAGCTCCTCCAGTGCAAGAGACTGTCAGCTAAGCTTATAATCTGCCTTGCAGGGTTGATTCACGTTGAGATCGAACTTCACGTTCATCGACAAATGCTTCAAGCATTGAACCAACCAAGAGAACAGAGCCTCGAGCTACGAAACGCAGCAATCGACGAAAATATGTCTCCCACGAAAATGTTACACAGTGACTCAGATAAAGAGTTACACATACGTTACAAGCGGCGTGTTCAAACCAATGTCAAGAAAACGAATGTTAGCGACACCGTCGATCGCGACGCCATCAAAAAAGAAGTGCGACTTGCTATGAGTAGAAACCAGGGTCCCCAGGGAATTCAGGGACCTCCCGGGCCTATAGGTCCCCCTGGAGTCAAGGGTGACCCTGGTAAATCTATCTCAGCCCCTTCAATTGTGGCACCTCCCATGTCCATGGCGGTAAACGAAACTAGTACAGCCTCGTTTCAGTGCCAGGTTAAAGGAAACCCAGAGCCAAAAGTAACGTGGCTGAAGCAGAATTCCAGTCTTCTTGCGGACAAGCGAATTGTGCCATCACGTGGAGGTCTGGTGATTACGGATGTCACTTCACACGATGACGGAATGTACACTTGTGTTGCAAGAAATATCTTAGGGGTGATGCAGGCATCCGCCGCATTGCATGTTCAAGTTGGCGCCAAGATCATTCGGAAACCCTCGTCTGTCATCGTTGAAGAAGGACAAAGTGTGACCCTGGTCTGCCAAGCTACTGGTCAGCCGACACCAACGGTCACGTGGCGAAAAGCTTTTAGCCAACTGCTGAAAGAGAGGACTGTTGCTGCAGGTGGCAATCTGACCATAGCTCATATAGCAAGAGCAGATGCCGGAGCTTACGCATGTGTTGCAAAGAACCTTCTCGGAGAAGACTCAGCTGTCGCACTTGTCGCAGTTATAAGCGGACTTAAATTTACTGTAAGGCCTCCTGTGAAAGTTGTGGCTGAAGTCTTCAGCAGTGTAATGTTTAACTGCACAGCTCAAGGTTCATTAGATATTGTTTGGAAAAGGGACGGTCAAGGTCTTCCTCAAAATCATGTTCTTTTGCCGAACGGAACTTTGCTTCTCAGGAACGTTTCTGCAATGGATGCTGGGACGTATATATGTGTAGCAAAAAACTCACACCGTTCCATTGAGGTCAAATCGGTATTTGAAGTGCTTAAACCCATGTCGTCGTCCTGTAGCAAACTAAAATCAGCTAACAGTGGAATATCTTCAGGTAGTTATATGATTGACCCTGATGGCAAAGGAGGCGTGACACCCTTCAGTGTGTACTGTGACATGAGTGACAAGGGCGGAGTGGGCGTGACTTTCATCAGTCACGACAGTGAGGGCAGAACTCACGTTGGTAACACCAATGGATGCGAATCGAAAGGATGTTACAGAAAAGATGTGCGATACACTGGAGTCAGCACCACTCAGCTAGCAGCACTCACTCGAGTCTCACAGAACTGTGAACAGTTTATCAAGTTTGAGTGCAAAAATGACGCGGGATCGGTTGCAGACGGTAATGCTTGGTGGATGTCACGTGATGGAACACGGATGAACTACTGGGGAGGAGCTACAGGCCATAATAAGATGTGCGCATGCGGAGTAACAAGCTCTTGTTCCAGTGGTTACAAGTGTAACTGCCATGGCGTATTTCCTAGATTATCTAATGCCGGTTGGAGAGAGGACAGCGGTCTGTTGACAGACAAGTCTGTTCTTCCGGTGACACAAATCAGACTCGGAGACTTGGGCGACTGGCCTCGTGAAGAAGGATATCATACATTAGGGAAACTCAAGTGTTATGGTCAAGCATAA

Transcript

ENSVTRT00000026360

Protein

Uniprot

Uniprot term	Description
Q9Z2I4	Roundabout homolog 3 OS=Mus musculus OX=10090 GN=Robo3 PE=1 SV=3
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan