Gene detail

Detailed information of ENSVTRP00000028211.1 in Madracis senaria

Genomic Location: :...
NR annotation: PFX23470.1, Nuclear localization sequence-binding protein [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSVTRT00000029847

ATGGCGAAGTTTGATACTTCTAAAAAGGAAAAGACTGTAGATGTGCCTAAAAAGCTTCCAAAGGGAAAAAAATCTAAGGCAAAAGAAGACAAAAAGCAAGCAACACATGGAACAAAAAAGGTGAAGGTTAAAGCCCAAAGAAGTACAGGccaagaaaaagcaaaaaagctTCCCCCAGCACAGCCATCTTCAGACTCTGATGATTCAAGTTCAGATGAGGATGAAGCTGTGTCAAGGAAATCGGCAGTCAAGAAAGAAATTAGTAAGAAGGTAAAAGTCAGTGCACCACAACTTAAGGGAATTGATAAAAGGCAAGACAACACATCAAGTGAAGAGTCCTCTTCAAGTGACAGTGAAGAAGTCAAGAAAGGGAAACCACTGCAACCAAAGGCACAATCTTCAGATTCCTCAGAGTCTTCAGATGAGGAtgagaaaacaaaaccaactacaaagaaacaaccaaaagtGCAAACAGGGAAACCAACTGGAGGAGTGAAGTCTTCTGAATCAAGCTCTGATTCATCTGATGAAGAAGACAAAAAGCCTTCAAATTCAGAGCATGCAAAATTATCAGTAAAGAAACCTGCCTTGAAGAGAGCATCTTCTGATTCCAGTTCAGATTCATCTGATGAAGGTGACGTGCAGAAGGAAGAAACAATAATCAAATCTAACATTAACTCAAAAATTGAATCTAAAACAGCATCTTCTGAATCCAGTTCAGATTCCTCTAATGAAGAAGAtgaaaaaccaaaaacagtGACAGAAAATgggaataaaaagaaagaagtaAAATCTAAAACCACATCCTCTGAATCCAGCTCTGATTCTTCTGATGAAGATGAAAaaccaaaaacgaaaacaacagaGAATGGAAGTAAAAAGAAAGAAGCAAAATCTGCAACAACATCTTCTGAGTCCAGCTCAGATTCCTCAGATGAAGAAGAtgaaaaaccaaaaacagtGACAGAGAATaggaataaaaagaaagaagtaAAATCTAAAGCAACATCATCTGAACCCAGCTTTGATTCTTCCAAGAAAgatgaaaaaccaaaaccaaaaccaaaacagaaTGGAAGTAAAAAGAAAGAAGCAAAATCTACAACAACATCTTCTGAGTCCAGCTCAGATTCCTCAgatgaagaaattgaaaaaccaaaaacagtGACAGAGaatataaacaaaaagaaagaagtaAAATCTAAAGCAATCTCATCTGAATCCAGCTCTGATTCTTCTGAGGAAGatgcaaaaccaaaaacaacagAGAATGCTAGTAAAAAGAAAGAAGCAACATCTAAAGCAACATCTTCCGAGTCCAGCTCAGATTCATCTGAAGAAGAAggtgcaaagaaaaaaaagaaaggaaaaggagTTAAGAACTCCAAGGTAGCATATTCTCAGGAAAACGGTGAAAACCCTATTAATGGGGacacaaaagaaataaatgaagaGCTGGAGTCCGACTCAGATTCAAGTAGTGATAGTGAAGAAGAGAAAGCTGACAAATTGCGAGGTAACAGTGAAAGGAAACAATCAAGTTCAGATGAGTCTGAGGTGGAGACCGACCACAAATTGGAAAAAAGGACCAAGAAGCGGAAGAACAATTTGTCAGATGAGGAGGCCTCTAGGACAACCAAGGCTAAGAAATCCCGGAAACTTAAAGAACCTTTGACAGAAAATGAAGAAGGATATGCCAATAATGATGGAACAAAAGATCATAACTTGATGGGACAACAACAAAAGAGAAAAGCAAACACAACTACTGAAGATTCTGGAGGCAAGAAACCAAAGCAAGATGACAATGTTAATGAGAAAATATCACTGTATGTGGGCAATTTGTCATTCGACTCTACTGAAGAAAGCCTTCAGGGTTTGTTTGAGGACAATGGTTTGACTCCAGAAAGTGTGAGACTCATAACAAGAGATGGAAGATGTAGAGGATTTGGGTATGTCGAATTTGGAAGCCCAGAAGAAGGTCAAAAGGGAATAGAACTTGATGGCTCAGAACTTGATGGCAGAACGGTGAGAATCAATATGGCTGAGGCAAGACGTACTCCAAGTGATAGAGGACATGGAAGATCACAACGCGGAGGTGGTTCTAACAGGGGCCATGCTAAAAGTACTCCAACAAGCACCATAATATGTATTGGTTTATCTTACAACACAGATAACGAGTCACTGCAGGGAGCTTTCCAAAACTGTGTAAGCACACGAGTCATCACTGACAGAGAAACTGGCAAGTCAAGGGGTTTCGGATATGTGGAGTTCGACAGTGTTGAGGATGCACAGTCTGCAATATCTTCAATGGATGGAAAAGACTTGGACGGTCGTTTTCTGCGACTTGATTTTGCTGAACCACGGTCCTCCACACCTGGGAGTGGAAGCGGTAGAGGTGGCAGCAGGGGCGGTAGAGGTGGTTTTGGTGGTAGAGGAGGTGGTTTTGGTGGTAGAGGAGGAGGGAGAGGTGGCTTTAGTGGCAGAGGTGGAGGGAGAGGGCGTGGAGGAGGTGGTAGAGGAGGAACTCCTACAAGTGCTGCACGCAAAGGAAATATTCAGGAATACAAGGGAACGAAGATTTCATTTGATGACTAG

Transcript

ENSVTRT00000029847

GTTTGCGGCCAGTCGTCGTCGTCCTTTCTCGGTGGAATTCTTGTGCATGCAAACACGTGGAAAAGAAGCCTTGGCTATTTTGTCTATTTTATCTGTCAGCAGACTTAAATCATCCTAAAAATGGCGAAGTTTGATACTTCTAAAAAGGAAAAGACTGTAGATGTGCCTAAAAAGCTTCCAAAGGGAAAAAAATCTAAGGCAAAAGAAGACAAAAAGCAAGCAACACATGGAACAAAAAAGGTGAAGGTTAAAGCCCAAAGAAGTACAGGccaagaaaaagcaaaaaagctTCCCCCAGCACAGCCATCTTCAGACTCTGATGATTCAAGTTCAGATGAGGATGAAGCTGTGTCAAGGAAATCGGCAGTCAAGAAAGAAATTAGTAAGAAGGTAAAAGTCAGTGCACCACAACTTAAGGGAATTGATAAAAGGCAAGACAACACATCAAGTGAAGAGTCCTCTTCAAGTGACAGTGAAGAAGTCAAGAAAGGGAAACCACTGCAACCAAAGGCACAATCTTCAGATTCCTCAGAGTCTTCAGATGAGGAtgagaaaacaaaaccaactacaaagaaacaaccaaaagtGCAAACAGGGAAACCAACTGGAGGAGTGAAGTCTTCTGAATCAAGCTCTGATTCATCTGATGAAGAAGACAAAAAGCCTTCAAATTCAGAGCATGCAAAATTATCAGTAAAGAAACCTGCCTTGAAGAGAGCATCTTCTGATTCCAGTTCAGATTCATCTGATGAAGGTGACGTGCAGAAGGAAGAAACAATAATCAAATCTAACATTAACTCAAAAATTGAATCTAAAACAGCATCTTCTGAATCCAGTTCAGATTCCTCTAATGAAGAAGAtgaaaaaccaaaaacagtGACAGAAAATgggaataaaaagaaagaagtaAAATCTAAAACCACATCCTCTGAATCCAGCTCTGATTCTTCTGATGAAGATGAAAaaccaaaaacgaaaacaacagaGAATGGAAGTAAAAAGAAAGAAGCAAAATCTGCAACAACATCTTCTGAGTCCAGCTCAGATTCCTCAGATGAAGAAGAtgaaaaaccaaaaacagtGACAGAGAATaggaataaaaagaaagaagtaAAATCTAAAGCAACATCATCTGAACCCAGCTTTGATTCTTCCAAGAAAgatgaaaaaccaaaaccaaaaccaaaacagaaTGGAAGTAAAAAGAAAGAAGCAAAATCTACAACAACATCTTCTGAGTCCAGCTCAGATTCCTCAgatgaagaaattgaaaaaccaaaaacagtGACAGAGaatataaacaaaaagaaagaagtaAAATCTAAAGCAATCTCATCTGAATCCAGCTCTGATTCTTCTGAGGAAGatgcaaaaccaaaaacaacagAGAATGCTAGTAAAAAGAAAGAAGCAACATCTAAAGCAACATCTTCCGAGTCCAGCTCAGATTCATCTGAAGAAGAAggtgcaaagaaaaaaaagaaaggaaaaggagTTAAGAACTCCAAGGTAGCATATTCTCAGGAAAACGGTGAAAACCCTATTAATGGGGacacaaaagaaataaatgaagaGCTGGAGTCCGACTCAGATTCAAGTAGTGATAGTGAAGAAGAGAAAGCTGACAAATTGCGAGGTAACAGTGAAAGGAAACAATCAAGTTCAGATGAGTCTGAGGTGGAGACCGACCACAAATTGGAAAAAAGGACCAAGAAGCGGAAGAACAATTTGTCAGATGAGGAGGCCTCTAGGACAACCAAGGCTAAGAAATCCCGGAAACTTAAAGAACCTTTGACAGAAAATGAAGAAGGATATGCCAATAATGATGGAACAAAAGATCATAACTTGATGGGACAACAACAAAAGAGAAAAGCAAACACAACTACTGAAGATTCTGGAGGCAAGAAACCAAAGCAAGATGACAATGTTAATGAGAAAATATCACTGTATGTGGGCAATTTGTCATTCGACTCTACTGAAGAAAGCCTTCAGGGTTTGTTTGAGGACAATGGTTTGACTCCAGAAAGTGTGAGACTCATAACAAGAGATGGAAGATGTAGAGGATTTGGGTATGTCGAATTTGGAAGCCCAGAAGAAGGTCAAAAGGGAATAGAACTTGATGGCTCAGAACTTGATGGCAGAACGGTGAGAATCAATATGGCTGAGGCAAGACGTACTCCAAGTGATAGAGGACATGGAAGATCACAACGCGGAGGTGGTTCTAACAGGGGCCATGCTAAAAGTACTCCAACAAGCACCATAATATGTATTGGTTTATCTTACAACACAGATAACGAGTCACTGCAGGGAGCTTTCCAAAACTGTGTAAGCACACGAGTCATCACTGACAGAGAAACTGGCAAGTCAAGGGGTTTCGGATATGTGGAGTTCGACAGTGTTGAGGATGCACAGTCTGCAATATCTTCAATGGATGGAAAAGACTTGGACGGTCGTTTTCTGCGACTTGATTTTGCTGAACCACGGTCCTCCACACCTGGGAGTGGAAGCGGTAGAGGTGGCAGCAGGGGCGGTAGAGGTGGTTTTGGTGGTAGAGGAGGTGGTTTTGGTGGTAGAGGAGGAGGGAGAGGTGGCTTTAGTGGCAGAGGTGGAGGGAGAGGGCGTGGAGGAGGTGGTAGAGGAGGAACTCCTACAAGTGCTGCACGCAAAGGAAATATTCAGGAATACAAGGGAACGAAGATTTCATTTGATGACTAGATGACTTGTACATTATAACAAACTGTCATTATAACTTAAGTTCAATTTGTGTAAAGTTAGAAGCAAGTGTTACTTTGTGCTACAGTGTAGCTTGGTTTTATTCTTTGCGAATTTCATAGCTGTTTTGGATGCCTTGTTTACCTAGTTTATTCGAGGTTCCAGACCTTGTGGTAAAGGGAATATTTATATACAGACTGTATTTTGTCGACGTGGACTTGATTACAGCAGTGGCATAAGTATAGATCAGTCAAAATAGTGTGCCTTTCACTGAGCTAGTTTTACAGCACCTACCAGTTACATGTTATCCTTAAGTCAAATTTCTCTTAGTACAAAATTTATCTTTCTTTCTGGTATTTCTGTGATATTTTACCACAGACCAAAAGCCGTCATGGACAGAATATGTAGTAATTATTTAAATCAATGTCAACTAAAGAattatacattattttatactatctttttaatttttttttatcgaatGTAGACTGGGCAAATCCTGCTGGATTGCACGACGAATTGAAAAAAAGACATACCCAAAGAGGTCATTTTCCTTTaactgtaatttattattattattattattattattattattattattattattattattattattattattattattattattattattattattattatcattattatcattattattttatcatttaAAGCGTTGCATTCTTGCCAATTAACAGAAATTGGTATACGCAGAAACGTGTGTACAATGGCGTTGCGAAGCAAGTTGCAGTTgctgaaaatacaaaaattaagtGCAGTGATCAGGGGGCCTAAGTTTAATTCAATTAGCAAAAGTTTCACTTAGAGAAAGCCCACAATTTGTAGCTGGGTTGAAAATACCCAGTATATATCACCTTTCAGCACCACTT

Protein

Uniprot

Uniprot term	Description
P20397	Nucleolin OS=Xenopus laevis OX=8355 GN=ncl PE=2 SV=3
P28644	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1
P08199	Nucleolin OS=Mesocricetus auratus OX=10036 GN=NCL PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR051106	Family	RNA-binding and splicing regulatory protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48028	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11294	NCL, NSR1; nucleolin	-	Chromosome and associated proteins	ko03036	deepkoala