Gene detail

Detailed information of ENSVTRP00000033010.1 in Madracis senaria

Genomic Location: :...
NR annotation: CAH3130437.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSVTRT00000035016

GTGGAAATTTCATTCACCTCGGCGATCATTTGCAAGACACCGGAACGAAATGGCGTTTTCTTTAGATCTGAAGCGTGTTTTAATCAGTGACAGCGTTGATAACTGCTGTAAAACGATTCTGGAAGCGAATGGAATCGCCGTAGATCTAAAAACGAAGCTCACGAAGGAAGAACTTCTTGCAGAAATACCGAATTATGACGGTCTGATTGTCCGATCAGCAACGAAAGTAACGGCAGAAGTGATCAAAGCtggaaaaaatctcaaaattatcGGTCGTGCTGGAACAGGCGTCGACAACATTGACATCCCGGCTGCTTCTCTTCGGGGAATTATTGTTATGAACACACCAGGAGGCAACACAATCAGTGCCGCTGAACAGACTTGTGTGCTCATGAGCTCCCTTGCAAGACACATTCCTCAGGCAGCTGCTTCCATGAAAGAGGGAAAATGGGACAGAAAGAAGACCATCGGCTATGACCCACTTGTTCCTgctgatgaagcagcaaagtaTAACATCGAATGGATGGAGCTCGACCAGTTATGGCCGAAAGCAGATTACATTACAGTGCACACACCCCTTATTCCACAGACTAAGGGCCTTGTGGGTGACAAGACGTTCCCACTCTGTAAAAAAGGCGTCTATGTGATGAACTGTGCCCGTGGCGGTATTATTGACGAGGCTTCACTGTTGAAGGCCTTGGAGTCAGGGCAGTGTGGTGGAGCAGGTCTGGATGTGTTTGAAACTGAGCCTCCTACTGGAGTATCTGCACAGTTGGTCCAGCACCCAAACGTAATAGCTTGTCCTCATCTCGGTGCCAGTACAGTCGAGGCACAAACCAGGGTTGCTAAGGAGATTGCCGAACAGTTTGTTGATGCTGTACAGGGGAAGTCGCTCTTTGGTGTGgTTAATGCCACATTCTTAACAGACGCCCTTCAGCCCCAGGCCCAGCCCTGGTTAAGCTTGGGAGAAAAACTGGGTAAGGTGGCTGCATGCCTTGCTCAAGGGAAAGTTACCAAGGCAACAGTAGCAACCCATGGTGCAGATATGAAACCTGCTGGACACTACATCACAGCTGCTGTGTCAGCAGGAATTATTGGAGGCGATGCTAATTTAGTGAATTCTGCCGTCATTTCTAAAGAGAAAGGATGTCAGGTATCATCTAGCCACGTGGATACAGTAGGACTCCCTTACTCTGGGGCAGTTTCAGTCACTGTCAACTGTGACGGCAAAGAGACCACCATAACTGGAACAGTGGTGGGTGTTGATGTACCAGTGCTGGTCAAGTATAACTCCCTGGTGTTCTGTGGTGCAGTGCCACTCTCTGGAAACTTGTTCTTTGCCAAGGGAAGTCCTGGAAAGGTTTTGGCTGACCTTGTGCCAAAATTTGGAGAAAATGGCACAATCAACTATGTGCATGTAGCAGGAGGTGGTGCAGAGAGTGTTGTCGTTGTCAGCACCTCTTCACAAATCTTGGCTGGTTACCCCTGCATCGCACTGTGAACAGCGAGTTTAGTCTCTAGCCTTAATCCTTATTATCAGCCATTAGTTGTGTCATCACACCTGAATTTGTTATGCAACAACACATAATTAGTTAGATCTGCAAAGGAAACAAGGTGGTTATTAGGTTTCAGTAAGTTAGTAGTTTATAATGATTTCAATTTACACAAAAATGAATCAAGATACCATGACGACATTCTATGACTGAATTCTGCTGAAATATGATTAAGCTTTAACAGAGACGGAAAATAAAGGAAAAGTGTGTGGAATAAGATTTTAAGCTTTTAGATCTGCAAGTTTTGACTCAAATTTGTTATCATGTAACAGAACATCAGAGAACTGAATTGTGACAGAACAGAGTGAAATGACTTGTAAGACTAAAATAGTCAACGGAAAACTATGGCCAATTAGGAGCCTAGCCTTGGATGAATTAAGTAAGACGGCTTAGCAACAAGTTgagaatatttattatttaagtaGAATTTTTTGTTGGATGTAGAATGGTTCCTCCATATTTTCAACTATATAGATATTGCAAATTCTGATAATAACTTACAGCTACCAAAACAAGGCTCAATTAAAAGAAGAGAATGATCAAGTGTTGTTTTTCTGCTTTAAAAAGCCTGCATGGTCTTCACTAGCAAATACGAACACAAGTGCATGCATGCATAACAACCCTTAATTATTTCCACGTAAAAACTAATCTCAGACGCAAGCGTAAGGATAAAATTGTTTCCCTTCCTTGTGCCTGTATTTGCATTGTGTCATGTGAAAATGCAACACAGCATAAGCACAATGGAGAGATTTATCATATCTGGAggaattaaccctttaagcccctacaGTGACCAGAATTGTATTTCTCCTCACAACATCACTGACTGCTTAAACATAATTATAGGTAACaataatgaatgaaatgatcatcAAAGATGAAacgtcttgatgtttaaacaaattct

Protein

Uniprot

Uniprot term	Description
Q61753	D-3-phosphoglycerate dehydrogenase OS=Mus musculus OX=10090 GN=Phgdh PE=1 SV=3
O08651	D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus OX=10116 GN=Phgdh PE=1 SV=3
Q5R7M2	D-3-phosphoglycerate dehydrogenase OS=Pongo abelii OX=9601 GN=PHGDH PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19304	PGDH_inter	D-3-phosphoglycerate dehydrogenase intervening domain	Domain	Interproscan
PF00389	2-Hacid_dh	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	Domain	Interproscan
PF02826	2-Hacid_dh_C	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045626	Domain	D-3-phosphoglycerate dehydrogenase, ASB domain	Interproscan
IPR006139	Domain	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	Interproscan
IPR029009	Homologous_superfamily	Allosteric substrate binding domain superfamily	Interproscan
IPR029753	Conserved_site	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site	Interproscan
IPR006140	Domain	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42938	FORMATE DEHYDROGENASE 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0051287	Molecular Function	NAD binding	Interproscan
GO:0004617	Molecular Function	phosphoglycerate dehydrogenase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00058	serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase	EC:1.1.1.95 EC:1.1.1.399	Exosome	ko04147	deepkoala