Gene detail

Detailed information of ENSVTRP00000033698.1 in Madracis senaria

Genomic Location: :...
NR annotation: XP_022782732.1, uncharacterized protein LOC111323605 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSVTRT00000035756

atgcaTACAGTACTGTACATACTGTATAATTATGTGTATGTattaaagcattttttttcCTTATGCTTCCTTATGGTGTACAGGAGCCTTACACCAAACccaaaattaaatgaaattgtTGCTGCAGTACGTAGTTTGCAGGGAGCAGTCCAAGAAGATACTGGAATCCCAACAGGCTCGCCGCCTTCACAGCCATTCAAGCCATCTGTCATAGCAAACGACACAGGATATGTTGGTTCTTCTATTCATCATCCAACTCCACAAAAATGTATCAATAATAGCAAGTGTGTAAAGCAGAAAGTTTCCAGAAATAACCCATTTAGCATATACATTGAAGATAATGACAATGCTGACCAAGCCCTGGAAAGAAAAGAGCCTGAAGTTGTATCAAATGTTAACATAAGGTCAACATTAGGACCAATATCGAcacaaaacacaacaaacagTGCAAAGTTAAAGTTAACGTCTAAGATGCCTTCAAACACCAAAACCGCAAGGAGGACAAGAAGTTCAAGGAGAAGAGCCCAGGAGATTCACCCTGAGGAGAACATGAACAGCAAAACTGTTAGTGAACAGCTGCTTCATATGATAGACACTTTACCATTCCAACCAGTTTCAAAAGGTGGTCCAATGTGTCAGGCGAAGGATAAAGCCTCAACTGCGGATGAATCTAAGCCGGATAAGAGAGTTGCACCCAGCCATATGTCATCCCAGTCAGCAGAAACTGAATGCCAAGTTAATAATCGAGCCACAGACAGCGAACAGACATTTCAGAATGCCTCTGTACAGCTTCAAAGAACTGTATGTTTAACAACTGTCGCCGAGGCGGACTCCTCTATCAGGACAAGCCCTTGTGACAACGAAGTGTTCATTGAAAACAAGGGCTCTTTTTGGCCGACGGTAATACCTGTAAGTACAACAGCAGATTACATGTACAAGGGGGATGAAGGAGCAGTGTCCAGCACAAAATTTGACTCTTTACTGAGTAGTGTGGATACCATGCAAAGTGTTTCTATCCTACCATCCCAGGACTGTCCTGAACAGCAAAGTGATGCAGTTCTGGACGATGCACAGGGtggaaaacaaaatgaaggcgCTTCTAAGAGTGAAGAGCTCGTCTGTCGGGGTATAGAACAAAGCAAGCTGATGCCAGGTGAGGGTTATGCAACAAAGACTCAAGAGGGACCGTTTttagattacaaagaaagtcaGAGTTATAACAATCTACAATCACCCCAGTCTGTACAGAAAGGGATGCCTCCTGAAAACATCGTTAGCACTGCGAAGGATAGTGCTCGAGAAAGTTTGGACTTTGAAGGTTTAGTTTCCTTGTTTCATGATCCTTCTTTGAATGAACATAATGATGCCACGCAAAACGaagatgatgttttgaaagaacaGCCAGATTTTAGTCGATCCGAGAGGGAGTCGTTTTCACCCACCAAGAAAGGGCGTGGTCATTGGGAAGTATCGCAGAATGAAAATTCCGAATCCGATTTGTACGAACGTGTAAAGCAGAGGAAAAGGCGACGACCATCCGAGATGTCCTTGCAAACAAACAGACGGTCTGAACATTCCAAGAAATCTATGCAGTTGAAAACAAAGACGAGAAAGAGATTTGTTGAATCTGAAGCCAGTTTAGCGGGCGATGATTCCATCCTTCCTGGAAATGCTCGAAAGAAGTTGAAGCAATCTGAGGATCTTTCGCTCGATAAGACCTCCCCGCTTGTGAGAAATACGAAAGAATTACAAGAGGATAGTTGGCAGCCTAGCGATTATAAAGAAAAGGACGAAGGCGTACATGTCAACGGAAGTGTTTTACAATCTGTGAAACGCGATGAACGAGTACGTGATGATTCGTCGCAGGGTAGTCAATCGTGTTCGAGCGGTAAGACCATACTTTCAAGCGAGATGATTCCAGCCAGTGTTTCTTCCTCAGAGAAATCACCCGTTGCAGTTATTAATCCAATGATTGCCCATGTTGATCAAGCTGCAAAAGGCGTTAAAAGTGGTGCTGCAAGGGAAACAGAGGGATCGGGTTCGGAAAACAGTAAGGGAAATAACCAGAGGGAAATCACCAAACACAATAACTATGCGGAGAATAGTTCGCATGAGATTACAAAGACTGAAGAGAGTCCTCAAATAAAGCTAATTTTTGATGGAGATAAAGAAAAGCGAACGAACCACGAACCGCGAGACCAGGTGGAAGCTCCCAAACACATCGTGCTTGGAGGAGACAAAAAGAGAAATATTCATGAGGGAGATACCGATAGGCGTGGCTTAAGTCAAGAAGTATTCGAAGCGCGTCACAAGGAGTCCCAGCCGTTTGATCCGAGTGAGAAAGCACTGATGTCTAGCTGTGACCAAGATTTACAATTCCAGAAAGAAGTAGAAGAACAGGGGCCTGACCAAGTGGACATAAATGATACCCTTACACCTTCACCGGAGGCAGATCCTGAACCTAAAGATCATTTGACACGTTCGTTCACCTGGCATTCTCAGGGAGACATTTTGACAGAGAGGAAAGGAATTGTAGATGGTTTAAATGGCAAATTGTCGAATGAAGTTGAGAATTTAACATCTCAGTCGTTAAGTCAGAAAGCCCAATTTCCAGACGACACTCCAACACAAAGTTCGTTGGAATTTTTGGATGCGATGACACCATGCCTGTTTGGAAACGACAGCTTGGAAACTCCAGTCAAAAAAAGCAGTTGGAAGAAGTCTGAAGACCAAAGCAGCCCCGATAGAACAGCAGACTTTAAAACTCTTGACCTCAGTAGCAAAACTAAAGGAAAGAACGACATGGATGTGAACAAAGATGGTTTTGATAGAGGGATTTCTCAGGATGGTATCGAAGCCGAATCTAGGAATGCTAAGCGACAGCAGTTCCCTGACATGACTCGCTGCTCCGATGCCGGTGAAGAGGGAGTTACCTTGGACACCAGCACAGAAGGAACTCAGAGCTTCGACACTAGTCAAAGCATCTCTGTTCTTCACGATTTGGAATTGCCTCCACAAGAACAATGCCAAGAAGAAACTAACTGCAGTGAGAATGTACAAGACCTTGACAAATCTACGCAGCATTCACAGTCAAAGCAGGATGCTTCTTGGGCAGAACCGCTTCCAAAGAAATCAAGAAATATTGAGATGTTATCGACTTCGCAAGATGTTACCGAATACCCAGACGTTTCATCCGAGCAGGGGAGTGGTCCAAGCATCGACAAGACCCGTGACTCGGAGTGCATGGAAAGTGACGTCATACCACCTACCCCACCGGTTAAACCTGTTGCTAAACACGTTTTCAGCAACCATGCTCGATCCCCATTGAGGCTATCACGTTCCAGTATAAAGGTACAAGGGGACGACAATGGGAGGTTTCAGTCTGAACATCTAGTCGTAAAACGAAATAGGCGAATTAAGAGTCCTCGTGTTTCAAAATCAGCAACATCGAGTTCTACAGGTGGTTCAACTGGCAGTGAGACGAGTGAAAACAGTGCCTCGTTACTGAAGAACCGTCAGAGCATAGCGCCGGACTTTAGTAAAGAGTTTGAGCCTTCACAGGGCAGGGATTCAGGAACTACAGTCAATAAATTGGAAACTACACCTTGTAAATCGCCAAGGGGCTTCGAAAAAAATGAGAAGTCGAGTAGTAGAACACTGGATGATCCTTGCACTTCACAAGAGAAAACTTACAGCCAAGGTTTATACAGGGAAAGTCAAACCGTGATGTCAAATTCTAAAGAAAGAACTTGGGAGGACTTTGTTGATAGTCCTTGCCCTGATATAGATAAACCAAACTCTTTACCGTGTAGTTCCAATAAACAAAAAGTTTATGGTGACATGGAGAATTCGTTTCGCTGGTCAGAAACTGAAGACAAACGAAATTCCCAATTTGCTCCTGTTGCTTCATATGATGGTAATATTAAGGAAATCTATGACAATGTCGAAGACGCGAATGATGATTTTACAGAAAAACCAGGAACAGAAAACCTGCATGGAAATGACGATCAAGATTGTATTCTTGTTGATGATGGTAAAGCGGATTTCTCCCATAGTGATGATGAAGGGTGCCGGAATTCCCCTAGCACTGTTGATGAAGGCCAGGATTCCTCTTGTACTGACGAAGAAGGAGATTCCTCAAGCGATGAAGCCTTACTGAAACCCGTGTTCCTTCCAAAGGCATCTGGATGTCATGAAAATGGAAGTTGCGCAGAAGACGACGAACATGATGAAGAGGAAGTGACGTCATTTTCCCAGGAACTCATTCCTTCTGAAGATGAAGGGGAAGATAATGACGAGGATGGAATATCATCTTGTAAAGCGTTGGACAGTACTGGTGCATCGTCGGCTACATTTCTGTCAGAAGCTGCGGCCTCTACACAGAAAATGGAAGTACTACGCCAGGATGTAGAAGCGATGAAAAAAGAGATGAAAGAGCTTAGAGCCTATCTCGCTAAAACAGACGAGCAAAGAAAAGAAGGAGAAAACACAACTGTAGAAGATGACATGGACTCTGTAGAAGAAGATCCACGTGATGACCCCGACGTGCTGTCTTCACTCACTCCACCACCTCCGCTGACACCCAAGAGCATCCCTCCCATGCGTCAACTATCCTCCCCCCTGAAAAACGCCTCGCGCTACCTAGATCAGGAGGGACAGTCTTCAGATGAAGACAGTGATTGTGAAGAGATAACGAGGAGTAATAGAGACGAACAGTGCGAGCTAAGAGCGAACTCTCGTAACAGAGGAGACGGTTGTATTGGAGAGAAGGAGGAGGTTAATAAATCGTGTACACGAAAGCGTCCCCTTTCACCAAGCTACGAAGATGATGGATTAAGCGTCACAGCGGTCGAAAATCGACAAGACAAGACGCCTTCTCCGCCGCGCGGTGCTCGCGCAAAACAAAAATCTCAAGGAGAAGAAGAGGATTTGATTGTTATTGATGATCGAGACCCGGTAAATTCAAAAACGGGGTCTCTTTTGCTTGTCAAGAGAAGGAAAATAGTCGATGAACTCGTCCCCAAGAAATCTCCCGTTGTTAGCTTGCTGTTTACAAGAGCAGGGAAAGATTCCACTACGTCTTTTCAGTCTCCAAGGTCACGTGGGCTGACTAAAGGGCTGTCGCCTATAAAGAAAAAGAAGTCTTCTCCTTTCATTTATTCACGCAAGCGCAGTACGGAAGCTTCCCCGATATCTGGACAGGATTCTACTGGGCCAGTATCACGTGAAAGTATGTCACGTGACACTGCACCACGTGACACTGCGCCACGTGACAGCTCACGTGGCGGGACACGCGATACTGGATCACCTCAAAGTGGATCACGTGATATTGTGTCAAGTGAGCGCGTGTCCACTGGTAGTATGTCACGTGTTCAAGGTCGGGCATCAGACGAGGCGCTCATGGAGCTGAAAACTGCCACGAACGTGAAAGAGAGTTCGGGGAAACGGAATAATGACAACCCAGGAAGTGGGATAACTAAACCTCTATCTTTTGTGGCAACTCGTCTAAACAGAAAGCAGCTAGCGGAAGCTCGCGCACTTGCTGAAACGTATGGCGGGAAACTAGCCAGCGAGTTTAACAACAAGACAACTCACGTGGTTATGGCTACAGATGAAAATATGCAGGTGACACGTCATAGTTATACCATGAAGTACCTACTGGGCCTAGCTCTTGGAAAATGGATCGTCAGTCATCAATGGATCGCTGCATGTATCGAAGCCAAAGCGCTCGTAGAGGAGGCGGATTATGAAGTGAAGGGTGACGCGGGTCTTGGACAAACCTGCATTCCTCGCTTGGCACGAATAGCTAGAAGTAAAAAGGTAGGGCTTGAAAAGATTACAACAGAATATTCCTTTAACTACTTGAAATGGTTTTGTTCTATTGCAGATCAACTGAGCCAACTGTTAAAATTTTGTGGAGCGCGTGTTTTCATCGAtgttgaaaatttaaaaagaataGAAAAGGATCGGCAAAAAGTTGTGGTTATCGATAAAGAAACTCGAAACAACGTGGATCACTTGAACGCTATCTGCCGTAGATTGAACACTATCCCTGTGTCCCTGGAGTGGGTAACAGACAGCATTGCAAATTACAaGGTTCAAGATTTAAAAGATTATGTCATCGAAACGGAAATACAGTGA

Transcript

ENSVTRT00000035756

Protein

ENSVTRP00000033698.1

MHTVLYILYNYVYVLKHFFSLCFLMVYRSLTPNPKLNEIVAAVRSLQGAVQEDTGIPTGSPPSQPFKPSVIANDTGYVGSSIHHPTPQKCINNSKCVKQKVSRNNPFSIYIEDNDNADQALERKEPEVVSNVNIRSTLGPISTQNTTNSAKLKLTSKMPSNTKTARRTRSSRRRAQEIHPEENMNSKTVSEQLLHMIDTLPFQPVSKGGPMCQAKDKASTADESKPDKRVAPSHMSSQSAETECQVNNRATDSEQTFQNASVQLQRTVCLTTVAEADSSIRTSPCDNEVFIENKGSFWPTVIPVSTTADYMYKGDEGAVSSTKFDSLLSSVDTMQSVSILPSQDCPEQQSDAVLDDAQGGKQNEGASKSEELVCRGIEQSKLMPGEGYATKTQEGPFLDYKESQSYNNLQSPQSVQKGMPPENIVSTAKDSARESLDFEGLVSLFHDPSLNEHNDATQNEDDVLKEQPDFSRSERESFSPTKKGRGHWEVSQNENSESDLYERVKQRKRRRPSEMSLQTNRRSEHSKKSMQLKTKTRKRFVESEASLAGDDSILPGNARKKLKQSEDLSLDKTSPLVRNTKELQEDSWQPSDYKEKDEGVHVNGSVLQSVKRDERVRDDSSQGSQSCSSGKTILSSEMIPASVSSSEKSPVAVINPMIAHVDQAAKGVKSGAARETEGSGSENSKGNNQREITKHNNYAENSSHEITKTEESPQIKLIFDGDKEKRTNHEPRDQVEAPKHIVLGGDKKRNIHEGDTDRRGLSQEVFEARHKESQPFDPSEKALMSSCDQDLQFQKEVEEQGPDQVDINDTLTPSPEADPEPKDHLTRSFTWHSQGDILTERKGIVDGLNGKLSNEVENLTSQSLSQKAQFPDDTPTQSSLEFLDAMTPCLFGNDSLETPVKKSSWKKSEDQSSPDRTADFKTLDLSSKTKGKNDMDVNKDGFDRGISQDGIEAESRNAKRQQFPDMTRCSDAGEEGVTLDTSTEGTQSFDTSQSISVLHDLELPPQEQCQEETNCSENVQDLDKSTQHSQSKQDASWAEPLPKKSRNIEMLSTSQDVTEYPDVSSEQGSGPSIDKTRDSECMESDVIPPTPPVKPVAKHVFSNHARSPLRLSRSSIKVQGDDNGRFQSEHLVVKRNRRIKSPRVSKSATSSSTGGSTGSETSENSASLLKNRQSIAPDFSKEFEPSQGRDSGTTVNKLETTPCKSPRGFEKNEKSSSRTLDDPCTSQEKTYSQGLYRESQTVMSNSKERTWEDFVDSPCPDIDKPNSLPCSSNKQKVYGDMENSFRWSETEDKRNSQFAPVASYDGNIKEIYDNVEDANDDFTEKPGTENLHGNDDQDCILVDDGKADFSHSDDEGCRNSPSTVDEGQDSSCTDEEGDSSSDEALLKPVFLPKASGCHENGSCAEDDEHDEEEVTSFSQELIPSEDEGEDNDEDGISSCKALDSTGASSATFLSEAAASTQKMEVLRQDVEAMKKEMKELRAYLAKTDEQRKEGENTTVEDDMDSVEEDPRDDPDVLSSLTPPPPLTPKSIPPMRQLSSPLKNASRYLDQEGQSSDEDSDCEEITRSNRDEQCELRANSRNRGDGCIGEKEEVNKSCTRKRPLSPSYEDDGLSVTAVENRQDKTPSPPRGARAKQKSQGEEEDLIVIDDRDPVNSKTGSLLLVKRRKIVDELVPKKSPVVSLLFTRAGKDSTTSFQSPRSRGLTKGLSPIKKKKSSPFIYSRKRSTEASPISGQDSTGPVSRESMSRDTAPRDTAPRDSSRGGTRDTGSPQSGSRDIVSSERVSTGSMSRVQGRASDEALMELKTATNVKESSGKRNNDNPGSGITKPLSFVATRLNRKQLAEARALAETYGGKLASEFNNKTTHVVMATDENMQVTRHSYTMKYLLGLALGKWIVSHQWIAACIEAKALVEEADYEVKGDAGLGQTCIPRLARIARSKKVGLEKITTEYSFNYLKWFCSIADQLSQLLKFCGARVFIDVENLKRIEKDRQKVVVIDKETRNNVDHLNAICRRLNTIPVSLEWVTDSIANYKVQDLKDYVIETEIQ

Uniprot

Uniprot term	Description
Q95153	Breast cancer type 1 susceptibility protein homolog OS=Canis lupus familiaris OX=9615 GN=BRCA1 PE=3 SV=1
Q864U1	Breast cancer type 1 susceptibility protein homolog OS=Bos taurus OX=9913 GN=BRCA1 PE=1 SV=1
P48754	Breast cancer type 1 susceptibility protein homolog OS=Mus musculus OX=10090 GN=Brca1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00533	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001357	Domain	BRCT domain	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR031099	Family	BRCA1-associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13763	BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0031436	Cellular Component	BRCA1-BARD1 complex	Interproscan
GO:0035066	Biological Process	obsolete positive regulation of histone acetylation	Interproscan
GO:0035067	Biological Process	obsolete negative regulation of histone acetylation	Interproscan
GO:0045717	Biological Process	negative regulation of fatty acid biosynthetic process	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0070531	Cellular Component	BRCA1-A complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10605	BRCA1; breast cancer type 1 susceptibility protein	EC:2.3.2.27	DNA repair and recombination proteins	ko03400	deepkoala